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D3Z962 (D3Z962_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length584 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000034933

Sequences

Sequence LengthMass (Da)Tools
D3Z962 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: D249E205B632F412

FASTA58464,875
        10         20         30         40         50         60 
MSLHILTDEN VPNEKSSESR DFLFSAPELT GRSSVLRLSQ KENVPPKNQA KAAKVTFQTP 

        70         80         90        100        110        120 
LRDPQTHRIL SPNMTSKLEA PFALDDSVGL QNDHCVFLQK ENQLPVAPVD DVPVVQMAAE 

       130        140        150        160        170        180 
ILKAEDELQE GILNSLSPSA FTSFPDGELV TPPIEPMPEP SPQGPEPLLD SEPVTPPVKP 

       190        200        210        220        230        240 
VLEPTPQGPE PLLDSEPVTP PVKPVLEPTP QGSEPLLDSE PVTLPVEPVP ESSHQGPEPL 

       250        260        270        280        290        300 
LDSEPVTLPV EPVPESSHQG PEPLLDPKEE SFRDPAEVLG AGAEVDYLEQ FGTSSFKESA 

       310        320        330        340        350        360 
WRKQSLYLKF DPLLKESPLR SMPVPVAPVT NSTQDTEESG SGNPTEAKLV DLDFLGGLDV 

       370        380        390        400        410        420 
PVSAPPLCVL EPRGLLPAEP IVDVLKYSQK DLDAVVMQQE NLELRNKYED LNTKYLEMGR 

       430        440        450        460        470        480 
SLMDLRRSCI SMEEAEKQKE LAEDKIQKIL RERDQLTADL NSMEKSFSDL FKRFEKQKEV 

       490        500        510        520        530        540 
IEGYQKNEDS LKKCVEDYIV KIGKEGQRYQ ALKAHAEEKL KMANEEIAQV RSKAQAEALA 

       550        560        570        580 
LQASLRKAQL QIQSLEKTVE QKTKENDELN RICDELIAKM EKKI 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000034933.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000034933.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06080196 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000032972; ENSRNOP00000034933; ENSRNOG00000017259.

Organism-specific databases

RGD1302948. Tacc3.

Phylogenomic databases

GeneTreeENSGT00530000063855.
OMALEPSHQG.
OrthoDBEOG7HB58V.
TreeFamTF333149.

Family and domain databases

InterProIPR007707. TACC.
[Graphical view]
PANTHERPTHR13924. PTHR13924. 1 hit.
PfamPF05010. TACC. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35565707.

Entry information

Entry nameD3Z962_RAT
AccessionPrimary (citable) accession number: D3Z962
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: March 19, 2014
This is version 25 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)