Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D3Z8I0

- D3Z8I0_RAT

UniProt

D3Z8I0 - D3Z8I0_RAT

Protein
Submitted name:

Protein Zfp541

Gene

Zfp541

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. chromatin binding Source: InterPro
    2. DNA binding Source: InterPro
    3. metal ion binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Zfp541Imported
    Gene namesi
    Name:Zfp541Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 1

    Organism-specific databases

    RGDi1310756. Zfp541.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-KW

    Keywords - Cellular componenti

    NucleusSAAS annotation

    PTM / Processingi

    Proteomic databases

    PRIDEiD3Z8I0.

    Structurei

    3D structure databases

    ProteinModelPortaliD3Z8I0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00530000063277.
    OMAiESQGLNC.
    OrthoDBiEOG7QVM1T.
    PhylomeDBiD3Z8I0.
    TreeFamiTF106431.

    Family and domain databases

    Gene3Di3.30.160.60. 3 hits.
    InterProiIPR000949. ELM2_dom.
    IPR009057. Homeodomain-like.
    IPR001005. SANT/Myb.
    IPR017884. SANT_dom.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view]
    PfamiPF01448. ELM2. 1 hit.
    PF00096. zf-C2H2. 1 hit.
    [Graphical view]
    SMARTiSM00717. SANT. 1 hit.
    SM00355. ZnF_C2H2. 5 hits.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 1 hit.
    PROSITEiPS51156. ELM2. 1 hit.
    PS51293. SANT. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 5 hits.
    PS50157. ZINC_FINGER_C2H2_2. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3Z8I0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEPYSLGEEG PLPSEGHLPS FSESQGLNCS DTLNRDLGPS TRDLLYAGLS     50
    GLDLDPSLST SDMPSEVLED NLDTLSLYSG KDSDSVKLLE EYADSESQTS 100
    LQDLGLGTLK VPKEADEGGR ATGSTRKGKR QHSSPQNPLL DCSLCGKVFS 150
    SASSLSKHYL THSQERKHVC KVCSKAFKRQ DHLTGHMLTH QKTKPFVCIE 200
    QGCSKSYCDY RSLRRHYEVQ HGVCILKEAP PEEESYGDPT HNHDVANQPP 250
    PSGLRSLGPP EARSPGSVLP NRDLLRCIVS SIVHQKIPSP GPAVGSSDTE 300
    ARSSACACPT SLGSSSCTPA STPVAPGTLG SEIPEETHPP RKEAATEMFT 350
    AVQSRAAENS APDPPESELE SESPRLQRPS SLEGWPEGSS LPACLPLFRG 400
    HSVPSGSQPS SHNFQWLRNL PSCPKNKSSN VFMVHKPSAV ASREGSEGGS 450
    GPSSTPTSVE PSPSLGTSQE DLLPFPPALL KAPGEASSEV RQVAGEDETW 500
    APKKCKPDCE SFPWQSPTEL GLQDAQNPGG LPSDATPLFR QLFMKSQESL 550
    VSHEQMQVLQ MIAKSQRIFS HTQVATAAAQ RPGPEGKQST LKPLQGPWPP 600
    QTLPPVPTVD SFQIGPGHSE PEGSPVRRRK TMPAVSRETS PGGPRRDTKG 650
    GPKVASAPPS LTGPALHPSR NPDNSSLAKG TLDLGDIIPS AGSRQSQLGG 700
    DEPSGTQLVG KQGQGENGLA SGAMRGEKGP ACPRGGGYRL FSGHPRAQRF 750
    SGFRKEKVKM DVCCAASPSQ VAMASFSSAG PLADPPRDMK SKLTIFNRIQ 800
    GGNIYRLPHP VKEESLAGGC HQPNGTPTDW MESKSTFVCK NCSQMFYTEK 850
    GLSSHMCFHS DQWPSPRGKQ EQQGQEKDGE ERDSKESSQY RKRKKRPQPK 900
    ALFAPPAPSA LGEPGPGGCH QSCLRSPVFL VDHLLKGLFQ CSPYTPPPML 950
    SPIREGSGLY FNTLCSTSRA GPHLVSPVLD QVDGSFGICV VKDDTKISIE 1000
    PHINVGSRFQ AEIPELQERP LTRVDENVAS LVWKPWGDVM TNPETQDRVM 1050
    ELCNVACSSV MPGGGTNLEL ALHCLHDAQG SVQVALETLL LRGPQKPRTH 1100
    PLADYRYTGS DIWTPMEKRL FKKAFCAHKK DFYLIHKTIQ TKSVAQCVEY 1150
    YYIWKKMVKF DCGRAPGLEK RGRRELDEVE RTEDKVTCSP RERPTHRPTP 1200
    ELKIKTKSYR RESILHSSPS AAPKRTPEPP GSVESQGVFP CRECERVFDK 1250
    IKSRNAHMKR HRLQEHVEPV RVKWPVKPYP LKEEEEEEEE ELGADMGPLQ 1300
    W 1301
    Length:1,301
    Mass (Da):141,861
    Last modified:April 20, 2010 - v1
    Checksum:i0FF876211EB9246C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06003772 Genomic DNA. No translation available.
    RefSeqiXP_003748823.1. XM_003748775.2.
    XP_003753266.1. XM_003753218.2.
    XP_006223152.1. XM_006223090.1.
    XP_006223153.1. XM_006223091.1.
    XP_006228419.1. XM_006228357.1.
    XP_006228420.1. XM_006228358.1.

    Genome annotation databases

    EnsembliENSRNOT00000058241; ENSRNOP00000055040; ENSRNOG00000021800.
    GeneIDi308108.
    KEGGirno:308108.
    UCSCiRGD:1310756. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06003772 Genomic DNA. No translation available.
    RefSeqi XP_003748823.1. XM_003748775.2.
    XP_003753266.1. XM_003753218.2.
    XP_006223152.1. XM_006223090.1.
    XP_006223153.1. XM_006223091.1.
    XP_006228419.1. XM_006228357.1.
    XP_006228420.1. XM_006228358.1.

    3D structure databases

    ProteinModelPortali D3Z8I0.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi D3Z8I0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000058241 ; ENSRNOP00000055040 ; ENSRNOG00000021800 .
    GeneIDi 308108.
    KEGGi rno:308108.
    UCSCi RGD:1310756. rat.

    Organism-specific databases

    CTDi 666528.
    RGDi 1310756. Zfp541.

    Phylogenomic databases

    GeneTreei ENSGT00530000063277.
    OMAi ESQGLNC.
    OrthoDBi EOG7QVM1T.
    PhylomeDBi D3Z8I0.
    TreeFami TF106431.

    Miscellaneous databases

    NextBioi 658364.

    Family and domain databases

    Gene3Di 3.30.160.60. 3 hits.
    InterProi IPR000949. ELM2_dom.
    IPR009057. Homeodomain-like.
    IPR001005. SANT/Myb.
    IPR017884. SANT_dom.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view ]
    Pfami PF01448. ELM2. 1 hit.
    PF00096. zf-C2H2. 1 hit.
    [Graphical view ]
    SMARTi SM00717. SANT. 1 hit.
    SM00355. ZnF_C2H2. 5 hits.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 1 hit.
    PROSITEi PS51156. ELM2. 1 hit.
    PS51293. SANT. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 5 hits.
    PS50157. ZINC_FINGER_C2H2_2. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD3Z8I0_RAT
    AccessioniPrimary (citable) accession number: D3Z8I0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3