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D3Z8I0 (D3Z8I0_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1301 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000055040

Ontologies

Keywords
   Cellular componentNucleus SAAS SAAS017884
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: InterPro

chromatin binding

Inferred from electronic annotation. Source: InterPro

metal ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3Z8I0 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 0FF876211EB9246C

FASTA1,301141,861
        10         20         30         40         50         60 
MEPYSLGEEG PLPSEGHLPS FSESQGLNCS DTLNRDLGPS TRDLLYAGLS GLDLDPSLST 

        70         80         90        100        110        120 
SDMPSEVLED NLDTLSLYSG KDSDSVKLLE EYADSESQTS LQDLGLGTLK VPKEADEGGR 

       130        140        150        160        170        180 
ATGSTRKGKR QHSSPQNPLL DCSLCGKVFS SASSLSKHYL THSQERKHVC KVCSKAFKRQ 

       190        200        210        220        230        240 
DHLTGHMLTH QKTKPFVCIE QGCSKSYCDY RSLRRHYEVQ HGVCILKEAP PEEESYGDPT 

       250        260        270        280        290        300 
HNHDVANQPP PSGLRSLGPP EARSPGSVLP NRDLLRCIVS SIVHQKIPSP GPAVGSSDTE 

       310        320        330        340        350        360 
ARSSACACPT SLGSSSCTPA STPVAPGTLG SEIPEETHPP RKEAATEMFT AVQSRAAENS 

       370        380        390        400        410        420 
APDPPESELE SESPRLQRPS SLEGWPEGSS LPACLPLFRG HSVPSGSQPS SHNFQWLRNL 

       430        440        450        460        470        480 
PSCPKNKSSN VFMVHKPSAV ASREGSEGGS GPSSTPTSVE PSPSLGTSQE DLLPFPPALL 

       490        500        510        520        530        540 
KAPGEASSEV RQVAGEDETW APKKCKPDCE SFPWQSPTEL GLQDAQNPGG LPSDATPLFR 

       550        560        570        580        590        600 
QLFMKSQESL VSHEQMQVLQ MIAKSQRIFS HTQVATAAAQ RPGPEGKQST LKPLQGPWPP 

       610        620        630        640        650        660 
QTLPPVPTVD SFQIGPGHSE PEGSPVRRRK TMPAVSRETS PGGPRRDTKG GPKVASAPPS 

       670        680        690        700        710        720 
LTGPALHPSR NPDNSSLAKG TLDLGDIIPS AGSRQSQLGG DEPSGTQLVG KQGQGENGLA 

       730        740        750        760        770        780 
SGAMRGEKGP ACPRGGGYRL FSGHPRAQRF SGFRKEKVKM DVCCAASPSQ VAMASFSSAG 

       790        800        810        820        830        840 
PLADPPRDMK SKLTIFNRIQ GGNIYRLPHP VKEESLAGGC HQPNGTPTDW MESKSTFVCK 

       850        860        870        880        890        900 
NCSQMFYTEK GLSSHMCFHS DQWPSPRGKQ EQQGQEKDGE ERDSKESSQY RKRKKRPQPK 

       910        920        930        940        950        960 
ALFAPPAPSA LGEPGPGGCH QSCLRSPVFL VDHLLKGLFQ CSPYTPPPML SPIREGSGLY 

       970        980        990       1000       1010       1020 
FNTLCSTSRA GPHLVSPVLD QVDGSFGICV VKDDTKISIE PHINVGSRFQ AEIPELQERP 

      1030       1040       1050       1060       1070       1080 
LTRVDENVAS LVWKPWGDVM TNPETQDRVM ELCNVACSSV MPGGGTNLEL ALHCLHDAQG 

      1090       1100       1110       1120       1130       1140 
SVQVALETLL LRGPQKPRTH PLADYRYTGS DIWTPMEKRL FKKAFCAHKK DFYLIHKTIQ 

      1150       1160       1170       1180       1190       1200 
TKSVAQCVEY YYIWKKMVKF DCGRAPGLEK RGRRELDEVE RTEDKVTCSP RERPTHRPTP 

      1210       1220       1230       1240       1250       1260 
ELKIKTKSYR RESILHSSPS AAPKRTPEPP GSVESQGVFP CRECERVFDK IKSRNAHMKR 

      1270       1280       1290       1300 
HRLQEHVEPV RVKWPVKPYP LKEEEEEEEE ELGADMGPLQ W 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000055040.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000055040.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06003772 Genomic DNA. No translation available.
RefSeqXP_003748823.1. XM_003748775.2.
XP_003753266.1. XM_003753218.2.
XP_006223152.1. XM_006223090.1.
XP_006223153.1. XM_006223091.1.
XP_006228419.1. XM_006228357.1.
XP_006228420.1. XM_006228358.1.

3D structure databases

ProteinModelPortalD3Z8I0.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDED3Z8I0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000058241; ENSRNOP00000055040; ENSRNOG00000021800.
GeneID308108.
KEGGrno:308108.
UCSCRGD:1310756. rat.

Organism-specific databases

CTD666528.
RGD1310756. Zfp541.

Phylogenomic databases

GeneTreeENSGT00530000063277.
OMAESQGLNC.
OrthoDBEOG7QVM1T.
PhylomeDBD3Z8I0.
TreeFamTF106431.

Family and domain databases

Gene3D3.30.160.60. 3 hits.
InterProIPR000949. ELM2_dom.
IPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamPF01448. ELM2. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTSM00717. SANT. 1 hit.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view]
SUPFAMSSF46689. SSF46689. 1 hit.
PROSITEPS51156. ELM2. 1 hit.
PS51293. SANT. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio658364.

Entry information

Entry nameD3Z8I0_RAT
AccessionPrimary (citable) accession number: D3Z8I0
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)