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Protein
Submitted name:

Protein Zfp541

Gene

Zfp541

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. chromatin binding Source: InterPro
  2. DNA binding Source: InterPro
  3. metal ion binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zfp541Imported
Gene namesi
Name:Zfp541Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 1

Organism-specific databases

RGDi1310756. Zfp541.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PRIDEiD3Z8I0.

Structurei

3D structure databases

ProteinModelPortaliD3Z8I0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063277.
InParanoidiD3Z8I0.
OMAiCPKSKGN.
OrthoDBiEOG7QVM1T.
PhylomeDBiD3Z8I0.
TreeFamiTF106431.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR000949. ELM2_dom.
IPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01448. ELM2. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51156. ELM2. 1 hit.
PS51293. SANT. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3Z8I0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEPYSLGEEG PLPSEGHLPS FSESQGLNCS DTLNRDLGPS TRDLLYAGLS
60 70 80 90 100
GLDLDPSLST SDMPSEVLED NLDTLSLYSG KDSDSVKLLE EYADSESQTS
110 120 130 140 150
LQDLGLGTLK VPKEADEGGR ATGSTRKGKR QHSSPQNPLL DCSLCGKVFS
160 170 180 190 200
SASSLSKHYL THSQERKHVC KVCSKAFKRQ DHLTGHMLTH QKTKPFVCIE
210 220 230 240 250
QGCSKSYCDY RSLRRHYEVQ HGVCILKEAP PEEESYGDPT HNHDVANQPP
260 270 280 290 300
PSGLRSLGPP EARSPGSVLP NRDLLRCIVS SIVHQKIPSP GPAVGSSDTE
310 320 330 340 350
ARSSACACPT SLGSSSCTPA STPVAPGTLG SEIPEETHPP RKEAATEMFT
360 370 380 390 400
AVQSRAAENS APDPPESELE SESPRLQRPS SLEGWPEGSS LPACLPLFRG
410 420 430 440 450
HSVPSGSQPS SHNFQWLRNL PSCPKNKSSN VFMVHKPSAV ASREGSEGGS
460 470 480 490 500
GPSSTPTSVE PSPSLGTSQE DLLPFPPALL KAPGEASSEV RQVAGEDETW
510 520 530 540 550
APKKCKPDCE SFPWQSPTEL GLQDAQNPGG LPSDATPLFR QLFMKSQESL
560 570 580 590 600
VSHEQMQVLQ MIAKSQRIFS HTQVATAAAQ RPGPEGKQST LKPLQGPWPP
610 620 630 640 650
QTLPPVPTVD SFQIGPGHSE PEGSPVRRRK TMPAVSRETS PGGPRRDTKG
660 670 680 690 700
GPKVASAPPS LTGPALHPSR NPDNSSLAKG TLDLGDIIPS AGSRQSQLGG
710 720 730 740 750
DEPSGTQLVG KQGQGENGLA SGAMRGEKGP ACPRGGGYRL FSGHPRAQRF
760 770 780 790 800
SGFRKEKVKM DVCCAASPSQ VAMASFSSAG PLADPPRDMK SKLTIFNRIQ
810 820 830 840 850
GGNIYRLPHP VKEESLAGGC HQPNGTPTDW MESKSTFVCK NCSQMFYTEK
860 870 880 890 900
GLSSHMCFHS DQWPSPRGKQ EQQGQEKDGE ERDSKESSQY RKRKKRPQPK
910 920 930 940 950
ALFAPPAPSA LGEPGPGGCH QSCLRSPVFL VDHLLKGLFQ CSPYTPPPML
960 970 980 990 1000
SPIREGSGLY FNTLCSTSRA GPHLVSPVLD QVDGSFGICV VKDDTKISIE
1010 1020 1030 1040 1050
PHINVGSRFQ AEIPELQERP LTRVDENVAS LVWKPWGDVM TNPETQDRVM
1060 1070 1080 1090 1100
ELCNVACSSV MPGGGTNLEL ALHCLHDAQG SVQVALETLL LRGPQKPRTH
1110 1120 1130 1140 1150
PLADYRYTGS DIWTPMEKRL FKKAFCAHKK DFYLIHKTIQ TKSVAQCVEY
1160 1170 1180 1190 1200
YYIWKKMVKF DCGRAPGLEK RGRRELDEVE RTEDKVTCSP RERPTHRPTP
1210 1220 1230 1240 1250
ELKIKTKSYR RESILHSSPS AAPKRTPEPP GSVESQGVFP CRECERVFDK
1260 1270 1280 1290 1300
IKSRNAHMKR HRLQEHVEPV RVKWPVKPYP LKEEEEEEEE ELGADMGPLQ

W
Length:1,301
Mass (Da):141,861
Last modified:April 20, 2010 - v1
Checksum:i0FF876211EB9246C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06003772 Genomic DNA. No translation available.
RefSeqiXP_003748823.1. XM_003748775.3.
XP_003753266.1. XM_003753218.3.
XP_006223152.1. XM_006223090.2.
XP_006223153.1. XM_006223091.2.
XP_006228419.1. XM_006228357.2.
XP_006228420.1. XM_006228358.2.
XP_008757249.1. XM_008759027.1.
XP_008757250.1. XM_008759028.1.
XP_008757251.1. XM_008759029.1.
XP_008772654.1. XM_008774432.1.
XP_008772655.1. XM_008774433.1.

Genome annotation databases

EnsembliENSRNOT00000058241; ENSRNOP00000055040; ENSRNOG00000021800.
GeneIDi308108.
KEGGirno:308108.
UCSCiRGD:1310756. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06003772 Genomic DNA. No translation available.
RefSeqiXP_003748823.1. XM_003748775.3.
XP_003753266.1. XM_003753218.3.
XP_006223152.1. XM_006223090.2.
XP_006223153.1. XM_006223091.2.
XP_006228419.1. XM_006228357.2.
XP_006228420.1. XM_006228358.2.
XP_008757249.1. XM_008759027.1.
XP_008757250.1. XM_008759028.1.
XP_008757251.1. XM_008759029.1.
XP_008772654.1. XM_008774432.1.
XP_008772655.1. XM_008774433.1.

3D structure databases

ProteinModelPortaliD3Z8I0.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiD3Z8I0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000058241; ENSRNOP00000055040; ENSRNOG00000021800.
GeneIDi308108.
KEGGirno:308108.
UCSCiRGD:1310756. rat.

Organism-specific databases

CTDi666528.
RGDi1310756. Zfp541.

Phylogenomic databases

GeneTreeiENSGT00530000063277.
InParanoidiD3Z8I0.
OMAiCPKSKGN.
OrthoDBiEOG7QVM1T.
PhylomeDBiD3Z8I0.
TreeFamiTF106431.

Miscellaneous databases

NextBioi658364.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR000949. ELM2_dom.
IPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01448. ELM2. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51156. ELM2. 1 hit.
PS51293. SANT. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3Z8I0_RAT
AccessioniPrimary (citable) accession number: D3Z8I0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: February 4, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.