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D3Z8I0

- D3Z8I0_RAT

UniProt

D3Z8I0 - D3Z8I0_RAT

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Protein
Submitted name:

Protein Zfp541

Gene
Zfp541
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. chromatin binding Source: InterPro
  2. DNA binding Source: InterPro
  3. metal ion binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zfp541Imported
Gene namesi
Name:Zfp541Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 1

Organism-specific databases

RGDi1310756. Zfp541.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotations

PTM / Processingi

Proteomic databases

PRIDEiD3Z8I0.

Structurei

3D structure databases

ProteinModelPortaliD3Z8I0.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063277.
OMAiESQGLNC.
OrthoDBiEOG7QVM1T.
PhylomeDBiD3Z8I0.
TreeFamiTF106431.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR000949. ELM2_dom.
IPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01448. ELM2. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51156. ELM2. 1 hit.
PS51293. SANT. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3Z8I0-1 [UniParc]FASTAAdd to Basket

« Hide

MEPYSLGEEG PLPSEGHLPS FSESQGLNCS DTLNRDLGPS TRDLLYAGLS     50
GLDLDPSLST SDMPSEVLED NLDTLSLYSG KDSDSVKLLE EYADSESQTS 100
LQDLGLGTLK VPKEADEGGR ATGSTRKGKR QHSSPQNPLL DCSLCGKVFS 150
SASSLSKHYL THSQERKHVC KVCSKAFKRQ DHLTGHMLTH QKTKPFVCIE 200
QGCSKSYCDY RSLRRHYEVQ HGVCILKEAP PEEESYGDPT HNHDVANQPP 250
PSGLRSLGPP EARSPGSVLP NRDLLRCIVS SIVHQKIPSP GPAVGSSDTE 300
ARSSACACPT SLGSSSCTPA STPVAPGTLG SEIPEETHPP RKEAATEMFT 350
AVQSRAAENS APDPPESELE SESPRLQRPS SLEGWPEGSS LPACLPLFRG 400
HSVPSGSQPS SHNFQWLRNL PSCPKNKSSN VFMVHKPSAV ASREGSEGGS 450
GPSSTPTSVE PSPSLGTSQE DLLPFPPALL KAPGEASSEV RQVAGEDETW 500
APKKCKPDCE SFPWQSPTEL GLQDAQNPGG LPSDATPLFR QLFMKSQESL 550
VSHEQMQVLQ MIAKSQRIFS HTQVATAAAQ RPGPEGKQST LKPLQGPWPP 600
QTLPPVPTVD SFQIGPGHSE PEGSPVRRRK TMPAVSRETS PGGPRRDTKG 650
GPKVASAPPS LTGPALHPSR NPDNSSLAKG TLDLGDIIPS AGSRQSQLGG 700
DEPSGTQLVG KQGQGENGLA SGAMRGEKGP ACPRGGGYRL FSGHPRAQRF 750
SGFRKEKVKM DVCCAASPSQ VAMASFSSAG PLADPPRDMK SKLTIFNRIQ 800
GGNIYRLPHP VKEESLAGGC HQPNGTPTDW MESKSTFVCK NCSQMFYTEK 850
GLSSHMCFHS DQWPSPRGKQ EQQGQEKDGE ERDSKESSQY RKRKKRPQPK 900
ALFAPPAPSA LGEPGPGGCH QSCLRSPVFL VDHLLKGLFQ CSPYTPPPML 950
SPIREGSGLY FNTLCSTSRA GPHLVSPVLD QVDGSFGICV VKDDTKISIE 1000
PHINVGSRFQ AEIPELQERP LTRVDENVAS LVWKPWGDVM TNPETQDRVM 1050
ELCNVACSSV MPGGGTNLEL ALHCLHDAQG SVQVALETLL LRGPQKPRTH 1100
PLADYRYTGS DIWTPMEKRL FKKAFCAHKK DFYLIHKTIQ TKSVAQCVEY 1150
YYIWKKMVKF DCGRAPGLEK RGRRELDEVE RTEDKVTCSP RERPTHRPTP 1200
ELKIKTKSYR RESILHSSPS AAPKRTPEPP GSVESQGVFP CRECERVFDK 1250
IKSRNAHMKR HRLQEHVEPV RVKWPVKPYP LKEEEEEEEE ELGADMGPLQ 1300
W 1301
Length:1,301
Mass (Da):141,861
Last modified:April 20, 2010 - v1
Checksum:i0FF876211EB9246C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06003772 Genomic DNA. No translation available.
RefSeqiXP_003748823.1. XM_003748775.2.
XP_003753266.1. XM_003753218.2.
XP_006223152.1. XM_006223090.1.
XP_006223153.1. XM_006223091.1.
XP_006228419.1. XM_006228357.1.
XP_006228420.1. XM_006228358.1.

Genome annotation databases

EnsembliENSRNOT00000058241; ENSRNOP00000055040; ENSRNOG00000021800.
GeneIDi308108.
KEGGirno:308108.
UCSCiRGD:1310756. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06003772 Genomic DNA. No translation available.
RefSeqi XP_003748823.1. XM_003748775.2.
XP_003753266.1. XM_003753218.2.
XP_006223152.1. XM_006223090.1.
XP_006223153.1. XM_006223091.1.
XP_006228419.1. XM_006228357.1.
XP_006228420.1. XM_006228358.1.

3D structure databases

ProteinModelPortali D3Z8I0.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi D3Z8I0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000058241 ; ENSRNOP00000055040 ; ENSRNOG00000021800 .
GeneIDi 308108.
KEGGi rno:308108.
UCSCi RGD:1310756. rat.

Organism-specific databases

CTDi 666528.
RGDi 1310756. Zfp541.

Phylogenomic databases

GeneTreei ENSGT00530000063277.
OMAi ESQGLNC.
OrthoDBi EOG7QVM1T.
PhylomeDBi D3Z8I0.
TreeFami TF106431.

Miscellaneous databases

NextBioi 658364.

Family and domain databases

Gene3Di 3.30.160.60. 3 hits.
InterProi IPR000949. ELM2_dom.
IPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF01448. ELM2. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view ]
SMARTi SM00717. SANT. 1 hit.
SM00355. ZnF_C2H2. 5 hits.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS51156. ELM2. 1 hit.
PS51293. SANT. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD3Z8I0_RAT
AccessioniPrimary (citable) accession number: D3Z8I0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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