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D3Z157

- D3Z157_MOUSE

UniProt

D3Z157 - D3Z157_MOUSE

Protein
Submitted name:

Intraflagellar transport protein 80 homolog

Gene

Ift80

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 4 out of 5- Protein predictedi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 2 (14 May 2014)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. bone morphogenesis Source: MGI
    2. chondrocyte differentiation Source: MGI
    3. cilium assembly Source: MGI
    4. cilium morphogenesis Source: MGI
    5. intraciliary transport Source: MGI
    6. negative regulation of epithelial cell proliferation Source: MGI
    7. negative regulation of non-canonical Wnt signaling pathway Source: MGI
    8. osteoblast differentiation Source: MGI
    9. positive regulation of smoothened signaling pathway Source: MGI
    10. smoothened signaling pathway Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Intraflagellar transport protein 80 homologImported
    Gene namesi
    Name:Ift80Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 3

    Organism-specific databases

    MGIiMGI:1915509. Ift80.

    Subcellular locationi

    GO - Cellular componenti

    1. centrosome Source: MGI
    2. ciliary basal body Source: MGI
    3. cilium Source: MGI
    4. intraciliary transport particle B Source: MGI

    Expressioni

    Gene expression databases

    ArrayExpressiD3Z157.
    BgeeiD3Z157.

    Structurei

    3D structure databases

    ProteinModelPortaliD3Z157.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    RepeatUniRule annotation, WD repeatUniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00440000033499.

    Family and domain databases

    Gene3Di2.130.10.10. 1 hit.
    InterProiIPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR017986. WD40_repeat_dom.
    [Graphical view]
    PfamiPF00400. WD40. 1 hit.
    [Graphical view]
    SMARTiSM00320. WD40. 2 hits.
    [Graphical view]
    SUPFAMiSSF50978. SSF50978. 1 hit.
    PROSITEiPS50082. WD_REPEATS_2. 1 hit.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    D3Z157-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRLKISLSKE PKHQELVSCV GWTTAEELYS CSDDHQIVKW NLLTSETSLI    50
    VKLPDDIYPI DLHWFPKSLG IKKQTQAESF VLTSSDGKFH LISKLGRVEK 100
    SVEAHCGAVL AGRWNYEGTA LVTVGEDGQV KIWSKTGMLR STLAQQGTPV 150
    YSVAWGPD 158
    Length:158
    Mass (Da):17,574
    Last modified:May 14, 2014 - v2
    Checksum:i416504589BBA5176
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei158 – 1581Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC115062 Genomic DNA. No translation available.
    AC122876 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSMUST00000148031; ENSMUSP00000122919; ENSMUSG00000027778.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC115062 Genomic DNA. No translation available.
    AC122876 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali D3Z157.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000148031 ; ENSMUSP00000122919 ; ENSMUSG00000027778 .

    Organism-specific databases

    MGIi MGI:1915509. Ift80.

    Phylogenomic databases

    GeneTreei ENSGT00440000033499.

    Miscellaneous databases

    NextBioi 35550208.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi D3Z157.
    Bgeei D3Z157.

    Family and domain databases

    Gene3Di 2.130.10.10. 1 hit.
    InterProi IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR017986. WD40_repeat_dom.
    [Graphical view ]
    Pfami PF00400. WD40. 1 hit.
    [Graphical view ]
    SMARTi SM00320. WD40. 2 hits.
    [Graphical view ]
    SUPFAMi SSF50978. SSF50978. 1 hit.
    PROSITEi PS50082. WD_REPEATS_2. 1 hit.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (MAY-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiD3Z157_MOUSE
    AccessioniPrimary (citable) accession number: D3Z157
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: May 14, 2014
    Last modified: October 1, 2014
    This is version 31 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3