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D3Z0M9

- D3Z0M9_MOUSE

UniProt

D3Z0M9 - D3Z0M9_MOUSE

Protein
Submitted name:

MCG18410, isoform CRA_a

Gene

Ddx23

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. ATP-dependent helicase activity Source: InterPro
    3. nucleic acid binding Source: InterPro

    Keywords - Molecular functioni

    HelicaseUniRule annotation, Hydrolase

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    MCG18410, isoform CRA_aImported
    Submitted name:
    Protein Ddx23Imported
    Gene namesi
    Name:Ddx23Imported
    ORF Names:mCG_18410Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 15

    Organism-specific databases

    MGIiMGI:1921601. Ddx23.

    Subcellular locationi

    GO - Cellular componenti

    1. catalytic step 2 spliceosome Source: Ensembl
    2. mitochondrion Source: Ensembl
    3. plasma membrane Source: Ensembl
    4. U5 snRNP Source: Ensembl

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the DEAD box helicase family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00740000115519.
    HOGENOMiHOG000268796.
    KOiK12858.
    OMAiPIRNWKE.
    OrthoDBiEOG7XH6P9.
    TreeFamiTF300527.

    Family and domain databases

    Gene3Di3.40.50.300. 2 hits.
    InterProiIPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
    IPR014001. Helicase_ATP-bd.
    IPR001650. Helicase_C.
    IPR027417. P-loop_NTPase.
    IPR000629. RNA-helicase_DEAD-box_CS.
    IPR014014. RNA_helicase_DEAD_Q_motif.
    [Graphical view]
    PfamiPF00270. DEAD. 1 hit.
    PF00271. Helicase_C. 1 hit.
    [Graphical view]
    SMARTiSM00487. DEXDc. 1 hit.
    SM00490. HELICc. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 2 hits.
    PROSITEiPS00039. DEAD_ATP_HELICASE. 1 hit.
    PS51192. HELICASE_ATP_BIND_1. 1 hit.
    PS51194. HELICASE_CTER. 1 hit.
    PS51195. Q_MOTIF. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3Z0M9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGELADKKD RDASPKEERK RSRTPERDRD RDRDRKSSPS KDRKRHRSRD    50
    RRRGGSRSRS RSRSKSVERE RRHKERERDK ERDRSKKERE RDKDGHRRDK 100
    DRKRSSLSPG RGKDFKSRKD RDSKKGDEDE HGDKRPKIQP LSLEELLAKK 150
    KAEEEAEAKP KFLSKAEREA EALKRRQQEV EERQKMLEEE RKKRKQFQDL 200
    GRKMLEDPQE RERRERRERM ERETNGNEDE EGRQKIREEK DKSKELHAIK 250
    ERYLGGIKKR RRTRHLNDRK FVFEWDASED TSIDYNPLYK ERHQVQLLGR 300
    GFIAGIDLKQ QKREQSRFYG DLMEKRRTLE EKEQEEARLR KLRKKEAKQR 350
    WDDRHWSQKK LDEMTDRDWR IFREDYSITT KGGKIPNPIR SWKDSSLPPH 400
    ILEVIDKCGY KEPTPIQRQA IPIGLQNRDI IGVAETGSGK TAAFLIPLLV 450
    WITTLPKIDR IEESDQGPYA IILAPTRELA QQIEEETIKF GKPLGIRTVA 500
    VIGGISREDQ GFRLRMGCEI VIATPGRLID VLENRYLVLS RCTYVVLDEA 550
    DRMIDMGFEP DVQKILEHMP VSNQKPDTDE AEDPEKMLAN FESGKHKYRQ 600
    TVMFTATMPP AVERLARSYL RRPAVVYIGS AGKPHERVEQ KVFLMSESEK 650
    RKKLLAILEQ GFDPPIIIFV NQKKGCDVLA KSLEKMGYNA CTLHGGKGQE 700
    QREFALSNLK AGAKDILVAT DVAGRGIDIQ DVSMVVNYDM AKNIEDYIHR 750
    IGRTGRAGKS GVAITFLTKE DSAVFYELKQ AILESPVSSC PPELANHPDA 800
    QHKPGTILTK KRREETIFA 819
    Length:819
    Mass (Da):95,495
    Last modified:April 20, 2010 - v1
    Checksum:i55D2738CEE657639
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC156543 Genomic DNA. No translation available.
    CH466550 Genomic DNA. Translation: EDL04176.1.
    RefSeqiNP_001074450.1. NM_001080981.1.
    XP_006521556.1. XM_006521493.1.
    UniGeneiMm.45725.

    Genome annotation databases

    EnsembliENSMUST00000003450; ENSMUSP00000003450; ENSMUSG00000003360.
    GeneIDi74351.
    KEGGimmu:74351.
    UCSCiuc007xne.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC156543 Genomic DNA. No translation available.
    CH466550 Genomic DNA. Translation: EDL04176.1 .
    RefSeqi NP_001074450.1. NM_001080981.1.
    XP_006521556.1. XM_006521493.1.
    UniGenei Mm.45725.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000003450 ; ENSMUSP00000003450 ; ENSMUSG00000003360 .
    GeneIDi 74351.
    KEGGi mmu:74351.
    UCSCi uc007xne.1. mouse.

    Organism-specific databases

    CTDi 9416.
    MGIi MGI:1921601. Ddx23.

    Phylogenomic databases

    GeneTreei ENSGT00740000115519.
    HOGENOMi HOG000268796.
    KOi K12858.
    OMAi PIRNWKE.
    OrthoDBi EOG7XH6P9.
    TreeFami TF300527.

    Miscellaneous databases

    ChiTaRSi DDX23. mouse.
    NextBioi 340513.
    PROi D3Z0M9.
    SOURCEi Search...

    Family and domain databases

    Gene3Di 3.40.50.300. 2 hits.
    InterProi IPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
    IPR014001. Helicase_ATP-bd.
    IPR001650. Helicase_C.
    IPR027417. P-loop_NTPase.
    IPR000629. RNA-helicase_DEAD-box_CS.
    IPR014014. RNA_helicase_DEAD_Q_motif.
    [Graphical view ]
    Pfami PF00270. DEAD. 1 hit.
    PF00271. Helicase_C. 1 hit.
    [Graphical view ]
    SMARTi SM00487. DEXDc. 1 hit.
    SM00490. HELICc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 2 hits.
    PROSITEi PS00039. DEAD_ATP_HELICASE. 1 hit.
    PS51192. HELICASE_ATP_BIND_1. 1 hit.
    PS51194. HELICASE_CTER. 1 hit.
    PS51195. Q_MOTIF. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
      Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
      , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
      Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    4. Ensembl
      Submitted (MAY-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiD3Z0M9_MOUSE
    AccessioniPrimary (citable) accession number: D3Z0M9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3