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D3Z0M9

- D3Z0M9_MOUSE

UniProt

D3Z0M9 - D3Z0M9_MOUSE

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Protein
Submitted name: MCG18410, isoform CRA_a
Gene
Ddx23, mCG_18410
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. ATP-dependent helicase activity Source: InterPro
  3. nucleic acid binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

HelicaseUniRule annotation, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
MCG18410, isoform CRA_aImported
Submitted name:
Protein Ddx23Imported
Gene namesi
Name:Ddx23Imported
ORF Names:mCG_18410Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 15

Organism-specific databases

MGIiMGI:1921601. Ddx23.

Subcellular locationi

GO - Cellular componenti

  1. U5 snRNP Source: Ensembl
  2. catalytic step 2 spliceosome Source: Ensembl
  3. mitochondrion Source: Ensembl
  4. plasma membrane Source: Ensembl
Complete GO annotation...

Family & Domainsi

Sequence similaritiesi

Belongs to the DEAD box helicase family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00740000115519.
HOGENOMiHOG000268796.
KOiK12858.
OMAiPIRNWKE.
OrthoDBiEOG7XH6P9.
TreeFamiTF300527.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000629. RNA-helicase_DEAD-box_CS.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00039. DEAD_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3Z0M9-1 [UniParc]FASTAAdd to Basket

« Hide

MAGELADKKD RDASPKEERK RSRTPERDRD RDRDRKSSPS KDRKRHRSRD    50
RRRGGSRSRS RSRSKSVERE RRHKERERDK ERDRSKKERE RDKDGHRRDK 100
DRKRSSLSPG RGKDFKSRKD RDSKKGDEDE HGDKRPKIQP LSLEELLAKK 150
KAEEEAEAKP KFLSKAEREA EALKRRQQEV EERQKMLEEE RKKRKQFQDL 200
GRKMLEDPQE RERRERRERM ERETNGNEDE EGRQKIREEK DKSKELHAIK 250
ERYLGGIKKR RRTRHLNDRK FVFEWDASED TSIDYNPLYK ERHQVQLLGR 300
GFIAGIDLKQ QKREQSRFYG DLMEKRRTLE EKEQEEARLR KLRKKEAKQR 350
WDDRHWSQKK LDEMTDRDWR IFREDYSITT KGGKIPNPIR SWKDSSLPPH 400
ILEVIDKCGY KEPTPIQRQA IPIGLQNRDI IGVAETGSGK TAAFLIPLLV 450
WITTLPKIDR IEESDQGPYA IILAPTRELA QQIEEETIKF GKPLGIRTVA 500
VIGGISREDQ GFRLRMGCEI VIATPGRLID VLENRYLVLS RCTYVVLDEA 550
DRMIDMGFEP DVQKILEHMP VSNQKPDTDE AEDPEKMLAN FESGKHKYRQ 600
TVMFTATMPP AVERLARSYL RRPAVVYIGS AGKPHERVEQ KVFLMSESEK 650
RKKLLAILEQ GFDPPIIIFV NQKKGCDVLA KSLEKMGYNA CTLHGGKGQE 700
QREFALSNLK AGAKDILVAT DVAGRGIDIQ DVSMVVNYDM AKNIEDYIHR 750
IGRTGRAGKS GVAITFLTKE DSAVFYELKQ AILESPVSSC PPELANHPDA 800
QHKPGTILTK KRREETIFA 819
Length:819
Mass (Da):95,495
Last modified:April 20, 2010 - v1
Checksum:i55D2738CEE657639
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC156543 Genomic DNA. No translation available.
CH466550 Genomic DNA. Translation: EDL04176.1.
RefSeqiNP_001074450.1. NM_001080981.1.
XP_006521556.1. XM_006521493.1.
UniGeneiMm.45725.

Genome annotation databases

EnsembliENSMUST00000003450; ENSMUSP00000003450; ENSMUSG00000003360.
GeneIDi74351.
KEGGimmu:74351.
UCSCiuc007xne.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC156543 Genomic DNA. No translation available.
CH466550 Genomic DNA. Translation: EDL04176.1 .
RefSeqi NP_001074450.1. NM_001080981.1.
XP_006521556.1. XM_006521493.1.
UniGenei Mm.45725.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000003450 ; ENSMUSP00000003450 ; ENSMUSG00000003360 .
GeneIDi 74351.
KEGGi mmu:74351.
UCSCi uc007xne.1. mouse.

Organism-specific databases

CTDi 9416.
MGIi MGI:1921601. Ddx23.

Phylogenomic databases

GeneTreei ENSGT00740000115519.
HOGENOMi HOG000268796.
KOi K12858.
OMAi PIRNWKE.
OrthoDBi EOG7XH6P9.
TreeFami TF300527.

Miscellaneous databases

ChiTaRSi DDX23. mouse.
NextBioi 340513.
PROi D3Z0M9.
SOURCEi Search...

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
InterProi IPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000629. RNA-helicase_DEAD-box_CS.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view ]
Pfami PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view ]
SMARTi SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 2 hits.
PROSITEi PS00039. DEAD_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  4. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiD3Z0M9_MOUSE
AccessioniPrimary (citable) accession number: D3Z0M9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 14, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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