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Protein
Submitted name:

Autophagy-related protein 16-1

Gene

Atg16l1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • autophagosome assembly Source: MGI
  • negative stranded viral RNA replication Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Autophagy-related protein 16-1Imported
Gene namesi
Name:Atg16l1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 1

Organism-specific databases

MGIiMGI:1924290. Atg16l1.

Subcellular locationi

GO - Cellular componenti

  • autophagosome Source: MGI
  • autophagosome membrane Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

BgeeiD3YZW7.
ExpressionAtlasiD3YZW7. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000108815.

Structurei

3D structure databases

ProteinModelPortaliD3YZW7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00800000124102.

Family and domain databases

InterProiIPR013923. Autophagy-rel_prot_16.
[Graphical view]
PfamiPF08614. ATG16. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D3YZW7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPNRHEISPG HDGAWNDSQL QEMAQLRIKH QEELTELHKK RGELAQLVID
60 70 80 90 100
LNNQMQQKDK EIQMNEAKIS EYLQTISDLE TNCLDLRTKL QDLEVANQTL
110 120 130 140 150
KDEYDALQIT FTALEEKLRK TTEENQELVT RWMAEKAQEA NRLNAENEKD

SRRR
Length:154
Mass (Da):18,144
Last modified:April 20, 2010 - v1
Checksum:i749123C5E01857F7
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei154 – 1541Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC102630 Genomic DNA. No translation available.
AC159967 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000144047; ENSMUSP00000120955; ENSMUSG00000026289.
UCSCiuc007bxi.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC102630 Genomic DNA. No translation available.
AC159967 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliD3YZW7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000108815.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000144047; ENSMUSP00000120955; ENSMUSG00000026289.
UCSCiuc007bxi.2. mouse.

Organism-specific databases

MGIiMGI:1924290. Atg16l1.

Phylogenomic databases

GeneTreeiENSGT00800000124102.

Miscellaneous databases

NextBioi35549901.
SOURCEiSearch...

Gene expression databases

BgeeiD3YZW7.
ExpressionAtlasiD3YZW7. baseline and differential.

Family and domain databases

InterProiIPR013923. Autophagy-rel_prot_16.
[Graphical view]
PfamiPF08614. ATG16. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiD3YZW7_MOUSE
AccessioniPrimary (citable) accession number: D3YZW7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 22, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.