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D3YZK4

- D3YZK4_MOUSE

UniProt

D3YZK4 - D3YZK4_MOUSE

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Protein
Submitted name:

Transcription initiation factor TFIID subunit 1

Gene
Taf1
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: MGI
  2. protein binding Source: MGI

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
  2. regulation of transcription, DNA-templated Source: InterPro
  3. response to drug Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription initiation factor TFIID subunit 1Imported
Gene namesi
Name:Taf1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:1336878. Taf1.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: MGI
  2. pronucleus Source: MGI
  3. transcription factor TFIID complex Source: MGI
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiD3YZK4.

Expressioni

Gene expression databases

BgeeiD3YZK4.

Structurei

3D structure databases

ProteinModelPortaliD3YZK4.
SMRiD3YZK4. Positions 1391-1657.

Family & Domainsi

Keywords - Domaini

BromodomainSAAS annotations

Phylogenomic databases

GeneTreeiENSGT00390000012659.
HOGENOMiHOG000020066.
OMAiDEFYYPK.
PhylomeDBiD3YZK4.
TreeFamiTF313573.

Family and domain databases

Gene3Di1.10.1100.10. 1 hit.
1.20.920.10. 2 hits.
InterProiIPR001487. Bromodomain.
IPR018359. Bromodomain_CS.
IPR011177. TAF1_animal.
IPR009067. TAF_II_230-bd.
IPR022591. TFIID_sub1_DUF3591.
[Graphical view]
PfamiPF00439. Bromodomain. 2 hits.
PF12157. DUF3591. 1 hit.
PF09247. TBP-binding. 1 hit.
[Graphical view]
PIRSFiPIRSF003047. TAF1_animal. 1 hit.
PRINTSiPR00503. BROMODOMAIN.
SMARTiSM00297. BROMO. 2 hits.
[Graphical view]
SUPFAMiSSF47055. SSF47055. 1 hit.
SSF47370. SSF47370. 2 hits.
PROSITEiPS00633. BROMODOMAIN_1. 2 hits.
PS50014. BROMODOMAIN_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3YZK4-1 [UniParc]FASTAAdd to Basket

« Hide

MGPGWAGLLQ DKGGGSPSVV MSDTDSDEES AGGGPFSLTG FLFGNINGAG     50
QLEGESVLDD ECKKHLAGLG ALGLGSLITE LTANEELSGS DGALVNDEGW 100
IRSREDAVDY SDINEVAEDE SRRYQQTMGS LQPLCHTDYD EDDYDADCED 150
IDCKLMPPPP PPPGPLKKEK DQDDITGEKV DFSSSSDSES EMGPQDAAQS 200
ESKDGQLTLP LAGIMQHDAT KLLPSVTELF PEFRPGKVLR FLRLFGPGKN 250
VPSVWRSARR KRKKKHRELI QEGQVQEEEC SVELEVNQKS LWNYDYAPPP 300
LPDQCLSDDE ITMMAPVESK FSQSTGDTDK VMDTKPRVAE WRYGPARLWY 350
DMLGVPEDGS GFDYGFKMKK TEHESTIKCN IMKKLRKLEE NSGVDLLADE 400
NFLMVTQLHW EDDIIWDGED VKHKGTKPQR ASLAGWLPSS MTRNAMAYNV 450
QQGRPCIKKP TSQTKQNTHT QNSISQPSGS LHTTLDDDKP WYSIFPIDNE 500
DLVYGRWEDN IIWDAQNMPR ILEPPVLTLD PNDENLILEI PDEKEEATSN 550
SPSKENKKES SLKKSRILLG KTGVIKEEPQ QNMSQPEVKD PWNLSNDEYY 600
YPKQQGLRGT FGGNIIQHSI PAVELRQPFF PTHMGPIKLR QFHRPPLKKY 650
SFGALSQPGP HSVQPLLKHI KKKAKMREQE RQASGGGEMF FMRTPQDLTG 700
KDGDLILAEY SEENGPLMMQ VGMATKIKNY YKRKPGKDPG APDCKYGETV 750
YCHTSPFLGS LHPGQLLQAF ENNLFRAPIY LHKMPESDFL IIRTRQGYFI 800
RELVDIFVVG QQCPLFEVPG PNSKRANTHI RDFLQVFIYR LFWKSKDRPR 850
RIRMEDIKKA FPSHSESSIR KRLKLCADFK RTGMDSNWWV LKSDFRLPTE 900
EEIRAMVSPE QCCAYYSMIA AEQRLKDAGY GEKSFFAPEE ENEEDFQMKI 950
DDEVRTAPWN TTRAFIAAMK GKCLLEVTGV ADPTGCGEGF SYVKIPNKPT 1000
QQKDDKEPQP VKKTVTGTDA DLRRLSLKNA KQLLRKFGVP EEEIKKLSRW 1050
EVIDVVRTMS TEQARSGEGP MSKFARGSRF SVAEHQERYK EECQRIFDLQ 1100
NKVLSSTEVL STDTDSSSAE DSDFEEMGKN IENMLQNKKT SSQLSREREE 1150
QERKELQRML LEADGEAAGS AAAGNNHRDD DTASVTSLNS SATGRCLKIY 1200
RTFRDEEGKE YVRCETVRKA TVIDAYVRIR TTKDEEFIRK FALFDEQHRE 1250
EMRKERRRIQ EQLRRLKRNQ EKEKLKGPPE KKPKKMKERP DLKLKCGACG 1300
AIGHMRTNKF CPLYYQTNAP PSNPVAMTEE QEEELEKTVI HNDNEELIKV 1350
EGTKIVLGKQ LIESADEVRR KSLVLKFPKQ QLPPKKKRRV GTTVHCDYLN 1400
RPHKSIHRRR TDPMVTLSSI LESIINDMRD LPNTYPFHTP VNAKVVKDYY 1450
KIITRPMDLQ TLRENVRKRL YPSREEFREH LELIVKNSAT YNGPKHSLTQ 1500
ISQSMLDLCD EKLKEKEDKL ARLEKAINPL LDDDDQVAFS FILDNIVTQK 1550
MMAVPDSWPF HHPVNKKFVP DYYKVIVSPM DLETIRKNIS KHKYQSRESF 1600
LDDVNLILAN SVKYNGPESQ YTKTAQEIVN VCHQTLTEYD EHLTQLEKDI 1650
CTAKEAALEE AELESLDPMT PGPYTPQPPD LYDNNTSLSV SRDASVYQDE 1700
SNLSVLDIPS ATSEKQLTQE GGDGDGDLAD EEEGTVQQPQ ASVLYEDLLM 1750
SEGEDDEEDA GSDEEGDNPF FAIQLSESGS DSDVESGSLR PKQPRVLQEN 1800
TRMGMENEES MMSYEGDGGD ASRGLEDSNI SYGSYEEPDP KSNTQDTSFS 1850
SIGGYEVSEE EEDEEEQRSG PSVLSQVHLS EDEEDSEDFH SIAGDTDLDS 1900
DE 1902
Length:1,902
Mass (Da):215,852
Last modified:April 20, 2010 - v1
Checksum:i082A891374BEABDE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL806534 Genomic DNA. No translation available.
AL831722 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000101341; ENSMUSP00000098895; ENSMUSG00000031314.
UCSCiuc009txw.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL806534 Genomic DNA. No translation available.
AL831722 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortali D3YZK4.
SMRi D3YZK4. Positions 1391-1657.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi D3YZK4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000101341 ; ENSMUSP00000098895 ; ENSMUSG00000031314 .
UCSCi uc009txw.1. mouse.

Organism-specific databases

MGIi MGI:1336878. Taf1.

Phylogenomic databases

GeneTreei ENSGT00390000012659.
HOGENOMi HOG000020066.
OMAi DEFYYPK.
PhylomeDBi D3YZK4.
TreeFami TF313573.

Miscellaneous databases

NextBioi 393355.
SOURCEi Search...

Gene expression databases

Bgeei D3YZK4.

Family and domain databases

Gene3Di 1.10.1100.10. 1 hit.
1.20.920.10. 2 hits.
InterProi IPR001487. Bromodomain.
IPR018359. Bromodomain_CS.
IPR011177. TAF1_animal.
IPR009067. TAF_II_230-bd.
IPR022591. TFIID_sub1_DUF3591.
[Graphical view ]
Pfami PF00439. Bromodomain. 2 hits.
PF12157. DUF3591. 1 hit.
PF09247. TBP-binding. 1 hit.
[Graphical view ]
PIRSFi PIRSF003047. TAF1_animal. 1 hit.
PRINTSi PR00503. BROMODOMAIN.
SMARTi SM00297. BROMO. 2 hits.
[Graphical view ]
SUPFAMi SSF47055. SSF47055. 1 hit.
SSF47370. SSF47370. 2 hits.
PROSITEi PS00633. BROMODOMAIN_1. 2 hits.
PS50014. BROMODOMAIN_2. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The phagosomal proteome in interferon-gamma-activated macrophages."
    Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P.
    Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.
  4. "SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
    Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
    Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiD3YZK4_MOUSE
AccessioniPrimary (citable) accession number: D3YZK4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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