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Protein
Submitted name:

Splicing factor 1

Gene

Sf1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Splicing factor 1Imported
Gene namesi
Name:Sf1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 19

Organism-specific databases

MGIiMGI:1095403. Sf1.

PTM / Processingi

Proteomic databases

MaxQBiD3YZC9.
PaxDbiD3YZC9.
PRIDEiD3YZC9.

Expressioni

Gene expression databases

BgeeiD3YZC9.
ExpressionAtlasiD3YZC9. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000121309.

Structurei

3D structure databases

ProteinModelPortaliD3YZC9.
SMRiD3YZC9. Positions 1-255.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini151 – 22272KHInterPro annotationAdd
BLAST
Domaini279 – 29315CCHC-typeInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 KH domain.UniRule annotation

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

eggNOGiKOG0119. Eukaryota.
COG5176. LUCA.
GeneTreeiENSGT00550000074434.
HOGENOMiHOG000237321.

Family and domain databases

Gene3Di3.30.1370.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR031150. BBP/SF1.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR032570. SF1-HH.
IPR001878. Znf_CCHC.
[Graphical view]
PANTHERiPTHR11208:SF45. PTHR11208:SF45. 1 hit.
PfamiPF00013. KH_1. 1 hit.
PF16275. SF1-HH. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
SM00343. ZnF_C2HC. 1 hit.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3YZC9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATGANATPL DFPSKKRKRS RWNQDTMEQK TVIPGMPTVI PPGLTREQER
60 70 80 90 100
AYIVQLQIED LTRKLRTGDL GIPPNPEDRS PSPEPIYNSE GKRLNTREFR
110 120 130 140 150
TRKKLEEERH TLITEMVALN PDFKPPADYK PPATRVSDKV MIPQDEYPEI
160 170 180 190 200
NFVGLLIGPR GNTLKNIEKE CNAKIMIRGK GSVKEGKVGR KDGQMLPGED
210 220 230 240 250
EPLHALVTAN TMENVKKAVE QIRNILKQGI ETPEDQNDLR KMQLRELARL
260 270 280 290 300
NGTLREDDNR ILRPWQSSET RSITNTTVCT KCGGAGHIAS DCKFQRPGDP
310 320 330 340 350
QSAQDKARMD KEYLSLMAEL GEAPVPASVG STSGPATTPL ASAPRPAAPA
360 370 380 390 400
SNPPPPSLMS TTQSRPPWMN SGPSENRPYH GMHGGGPGGP GGGPHSFPHP
410 420 430 440 450
LPSLTGGHGG HPMQHNPNGP PPPWMQPPPP PMNQGPHPPG HHGPPPMGKS
460 470 480 490 500
VPGKYACGLW GLSPASRKRY DAAAAYGHDA AASATSQWAA PASSLWSSSS
510 520 530 540 550
MAAAAAAASA TPSAQQQYGF QHPLAMAAKI PPRGSDGPSH ESEDFPRPLV
560 570
TLPGRQPQQR PWWTGWFGKA A
Length:571
Mass (Da):61,756
Last modified:April 20, 2010 - v1
Checksum:iA491BB9A87E94013
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC127556 Genomic DNA. No translation available.
AC167245 Genomic DNA. No translation available.
RefSeqiXP_006531800.1. XM_006531737.2.
UniGeneiMm.256422.

Genome annotation databases

EnsembliENSMUST00000113489; ENSMUSP00000109117; ENSMUSG00000024949.
GeneIDi22668.
UCSCiuc008gil.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC127556 Genomic DNA. No translation available.
AC167245 Genomic DNA. No translation available.
RefSeqiXP_006531800.1. XM_006531737.2.
UniGeneiMm.256422.

3D structure databases

ProteinModelPortaliD3YZC9.
SMRiD3YZC9. Positions 1-255.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000121309.

Proteomic databases

MaxQBiD3YZC9.
PaxDbiD3YZC9.
PRIDEiD3YZC9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000113489; ENSMUSP00000109117; ENSMUSG00000024949.
GeneIDi22668.
UCSCiuc008gil.2. mouse.

Organism-specific databases

CTDi7536.
MGIiMGI:1095403. Sf1.

Phylogenomic databases

eggNOGiKOG0119. Eukaryota.
COG5176. LUCA.
GeneTreeiENSGT00550000074434.
HOGENOMiHOG000237321.

Miscellaneous databases

ChiTaRSiSf1. mouse.
NextBioi35549766.
SOURCEiSearch...

Gene expression databases

BgeeiD3YZC9.
ExpressionAtlasiD3YZC9. baseline and differential.

Family and domain databases

Gene3Di3.30.1370.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR031150. BBP/SF1.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR032570. SF1-HH.
IPR001878. Znf_CCHC.
[Graphical view]
PANTHERiPTHR11208:SF45. PTHR11208:SF45. 1 hit.
PfamiPF00013. KH_1. 1 hit.
PF16275. SF1-HH. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
SM00343. ZnF_C2HC. 1 hit.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  2. "The phagosomal proteome in interferon-gamma-activated macrophages."
    Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P.
    Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. "Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry."
    Sweet S.M., Bailey C.M., Cunningham D.L., Heath J.K., Cooper H.J.
    Mol. Cell. Proteomics 8:904-912(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  5. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  6. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiD3YZC9_MOUSE
AccessioniPrimary (citable) accession number: D3YZC9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 16, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.