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Protein

Coronin

Gene

Coro1a

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
CoroninUniRule annotation
Gene namesi
Name:Coro1aImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 7

Organism-specific databases

MGIiMGI:1345961. Coro1a.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Proteomic databases

PaxDbiD3YXM2.
PeptideAtlasiD3YXM2.
PRIDEiD3YXM2.

Expressioni

Gene expression databases

BgeeiENSMUSG00000030707.
ExpressionAtlasiD3YXM2. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000032949.

Structurei

3D structure databases

SMRiD3YXM2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini77 – 116WD_REPEATS_REGIONInterPro annotationAdd BLAST40
Repeati77 – 116WDPROSITE-ProRule annotationAdd BLAST40

Sequence similaritiesi

Belongs to the WD repeat coronin family.UniRule annotation

Keywords - Domaini

RepeatUniRule annotation, WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0303. Eukaryota.
ENOG410XQAD. LUCA.
GeneTreeiENSGT00760000119195.
HOGENOMiHOG000166356.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiView protein in InterPro
IPR029508. CORO1A.
IPR015505. Coronin.
IPR015048. DUF1899.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
PANTHERiPTHR10856. PTHR10856. 1 hit.
PTHR10856:SF31. PTHR10856:SF31. 1 hit.
PfamiView protein in Pfam
PF08953. DUF1899. 1 hit.
PF00400. WD40. 1 hit.
SMARTiView protein in SMART
SM01166. DUF1899. 1 hit.
SM00320. WD40. 1 hit.
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Fragment.

D3YXM2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRQVVRSSK FRHVFGQPAK ADQCYEDVRV SQTTWDSGFC AVNPKFMALI
60 70 80 90 100
CEASGGGAFL VLPLGKTGRV DKNVPLVCGH TAPVLDIAWC PHNDNVIASG
110
SEDCTVMVWE IPDGGL
Length:116
Mass (Da):12,509
Last modified:October 5, 2016 - v8
Checksum:i72A2F2596C469FBE
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei116Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC124505 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000135087; ENSMUSP00000115960; ENSMUSG00000030707.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC124505 Genomic DNA. No translation available.

3D structure databases

SMRiD3YXM2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000032949.

Proteomic databases

PaxDbiD3YXM2.
PeptideAtlasiD3YXM2.
PRIDEiD3YXM2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000135087; ENSMUSP00000115960; ENSMUSG00000030707.

Organism-specific databases

MGIiMGI:1345961. Coro1a.

Phylogenomic databases

eggNOGiKOG0303. Eukaryota.
ENOG410XQAD. LUCA.
GeneTreeiENSGT00760000119195.
HOGENOMiHOG000166356.

Miscellaneous databases

ChiTaRSiCoro1a. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000030707.
ExpressionAtlasiD3YXM2. baseline and differential.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiView protein in InterPro
IPR029508. CORO1A.
IPR015505. Coronin.
IPR015048. DUF1899.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
PANTHERiPTHR10856. PTHR10856. 1 hit.
PTHR10856:SF31. PTHR10856:SF31. 1 hit.
PfamiView protein in Pfam
PF08953. DUF1899. 1 hit.
PF00400. WD40. 1 hit.
SMARTiView protein in SMART
SM01166. DUF1899. 1 hit.
SM00320. WD40. 1 hit.
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD3YXM2_MOUSE
AccessioniPrimary (citable) accession number: D3YXM2
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: October 5, 2016
Last modified: February 15, 2017
This is version 61 of the entry and version 8 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.