D3YWD1 (D3YWD1_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Col6a3 Ensembl ENSMUSP00000115210

Gene names

Name:

Col6a3 Ensembl ENSMUSP00000115210 MGI 88461

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000115210

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	1703 AA.
Sequence status	Fragment.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000115210

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	extracellular matrix Inferred from direct assay PubMed 16810681PubMed 8806434. Source: MGI extracellular space Inferred from direct assay PubMed 10444069. Source: MGI sarcolemma Inferred from direct assay PubMed 16810681. Source: MGI
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1703	1	Ensembl ENSMUSP00000115210

Sequences

	Sequence		Length	Mass (Da)
	D3YWD1 [UniParc]. Last modified October 3, 2012. Version 2. Checksum: B12CA8944C16FB66	FASTA	1,703	185,729
	10 20 30 40 50 60 MRKHRHLPLV AVFSLLLSGI ATTHAQQHGD VKNGAAADIV FLVDSSWSAG KDRFLLVQEF 70 80 90 100 110 120 LSDVVESLAV GDNDFHFALV RLNGNPHTEF LLNTYHSKQE VLSHIVNMSY IGGSNQTGKG 130 140 150 160 170 180 LEYVIHSHLT EASGSRAADG VPQVIIVLTD GQSEDGFALP SAELKSADVN VFAVGVEGAD 190 200 210 220 230 240 ERALGEVASE PLSMHVFNLE NVTSLHGLVG NLVSCIHSSV NPERAGDKES LKDITAQDSA 250 260 270 280 290 300 DIIFLIDGSQ NTGNANFDVI RDFLVNVLER LSVGNQQVQV GVVQYSEEPI TMFSLNSYPS 310 320 330 340 350 360 KAAVLDAVKG LSLVGGESAN IGQALDFVVE NHFTRAGGSR VEEGVPQVLV LISAGPSSDE 370 380 390 400 410 420 IRDSVVALKQ ASVFSFGLGA QAASRAELQH IATDDSLVFT VPEFRSFGDL QEQILPYLVG 430 440 450 460 470 480 VAQRHIVLQP PAIVTQVMEV NKRDIVFLVD GSSSLGPSNF NAIRDFVTRV IQRLEIGQDL 490 500 510 520 530 540 VQVSVAQYAD TVKPEFYLNS YTNKRDAITA VRKMRALNGS ALYTGSSLDF VRNNLFTSSA 550 560 570 580 590 600 GHRAAEGVPK LLVLITGGKS LDEVSQPAQE LKRGSIMALA VGSKAADEDE LKEIAFDSSL 610 620 630 640 650 660 VFIPAEFRPA PLQNMLPSLM APLRTLTGTT EVHVNKRDII FLLDGSDNVG KNNFPYVRDF 670 680 690 700 710 720 VTNLVNSLDV GSDNIRVGLV QFSDTPVTEF SLDTYQTKSE LLAHLRRLQL KGGSGLNAGS 730 740 750 760 770 780 ALSYIHANHF TEAGGSRTRE HVPQLLLLLM AGPSEDAYLQ AANALVRSGV LTFCVGTNRA 790 800 810 820 830 840 DKAELEHIAF NPSLVYLMDD FRSLPSLPQQ LIQPLTTYVS GGVQEVPLSQ PESKRDILFL 850 860 870 880 890 900 FDGSVNVLGQ FPAVRDFLYR IIEELDVKPD GTRVAIAQFS DDVRLESRFS EHQTKAEILN 910 920 930 940 950 960 LVKKMKLKTG KALNLGYALD YALRNIFVRS AGSRIEDNVQ QFLVLLVAGR SSDAVAGPAS 970 980 990 1000 1010 1020 SLKQRGVVPF IFQAKNANPS ELEQIVLSPA FILAAESLPK IGDLQSQIVS LLKAEQGSGP 1030 1040 1050 1060 1070 1080 VSGEKDVVFL IDGSEGVRSG FPLLKDFVQR VVESLDVGPD RVRVALVQYS DRTRPEFYLN 1090 1100 1110 1120 1130 1140 SHMDQQGVIS AIRRLTLLGG PTPNTGAALE FVLRNILTSS TGSRIAEGVP QLLIVLTAEP 1150 1160 1170 1180 1190 1200 SGDDVRGPSV VLKQGGAVPI GIGIGNADIS EMQTISFIPD FAVAIPTFRE LGTIQQVISE 1210 1220 1230 1240 1250 1260 RVIQLNREEL SSLKPILTPS TGAGVGSKKD VVFLIDGSRN AGPEFQYIRT LIERIVEYLD 1270 1280 1290 1300 1310 1320 IGFDTTRVAV IQFSEDSKME FPLNAHFSKD EVQNAVRRLR PKGGSQVYIG NALEYVLKNI 1330 1340 1350 1360 1370 1380 FQRPLGSRIE EGVPQFLVLI SSGKSDDEVD DSAVELKQFG VAPLTIARHT DQEELVKISL 1390 1400 1410 1420 1430 1440 SPEYVYSVST FRELPRLEQK LLTPITTLTS QQIHQILAST RYPPSVVESD AADIVFLIDS 1450 1460 1470 1480 1490 1500 SDAVKPDGIA HIRDFVSRIV RRLNIGPSKV RIGVVQFSND VFPEFYLKTH KSQSSVLEAI 1510 1520 1530 1540 1550 1560 RRLRFKGGSP LNTGRALEFV ARNLFVKSAG SRIEDGVPQH LVLFLGGKSQ DDVARHAQVI 1570 1580 1590 1600 1610 1620 SSSGIVSLGI GDRNIDRTDL QTITNDPRLV FTVREFRELP NIEERVMLSF GPSGATPQPP 1630 1640 1650 1660 1670 1680 GVDLPSPSRP EKKKADIVFL LDGSINFRRD SFQEVLRFAS EIVDTVYEDG DSIRVGLVQY 1690 1700 NSDPTDEFFL RDFSTKRQII DAI

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000115210.
[2]	Ensembl Submitted (MAY-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000115210.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC110895 Genomic DNA. No translation available. AC158773 Genomic DNA. No translation available. FQ976558 Genomic DNA. No translation available.
IPI	IPI00845618.
3D structure databases
ProteinModelPortal	D3YWD1.
ModBase	Search...
Proteomic databases
PRIDE	D3YWD1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000130846; ENSMUSP00000115210; ENSMUSG00000048126.
Organism-specific databases
MGI	MGI:88461. Col6a3.
Phylogenomic databases
GeneTree	ENSGT00530000063022.
HOGENOM	HOG000168250.
Gene expression databases
Bgee	D3YWD1.
Family and domain databases
InterPro	IPR002035. VWF_A. [Graphical view]
Pfam	PF00092. VWA. 9 hits. [Graphical view]
SMART	SM00327. VWA. 8 hits. [Graphical view]
PROSITE	PS50234. VWFA. 9 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	35549073.
SOURCE	Search...

Entry information

Entry name

D3YWD1_MOUSE

Accession

Primary (citable) accession number: D3YWD1

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	October 3, 2012
Last modified:	April 3, 2013
This is version 21 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)