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D3YWD1

- D3YWD1_MOUSE

UniProt

D3YWD1 - D3YWD1_MOUSE

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Protein
Submitted name: Protein Col6a3
Gene
Col6a3
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

Enzyme and pathway databases

ReactomeiREACT_196606. ECM proteoglycans.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_216309. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Col6a3Imported
Gene namesi
Name:Col6a3Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 1

Organism-specific databases

MGIiMGI:88461. Col6a3.

Subcellular locationi

GO - Cellular componenti

  1. extracellular matrix Source: MGI
  2. extracellular space Source: MGI
  3. sarcolemma Source: MGI
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiD3YWD1.

Expressioni

Gene expression databases

ArrayExpressiD3YWD1.
BgeeiD3YWD1.

Structurei

3D structure databases

ProteinModelPortaliD3YWD1.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00730000110647.
HOGENOMiHOG000168250.

Family and domain databases

Gene3Di3.40.50.410. 9 hits.
InterProiIPR002035. VWF_A.
[Graphical view]
PfamiPF00092. VWA. 9 hits.
[Graphical view]
SMARTiSM00327. VWA. 8 hits.
[Graphical view]
SUPFAMiSSF53300. SSF53300. 9 hits.
PROSITEiPS50234. VWFA. 9 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D3YWD1-1 [UniParc]FASTAAdd to Basket

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MRKHRHLPLV AVFSLLLSGI ATTHAQQHGD VKNGAAADIV FLVDSSWSAG     50
KDRFLLVQEF LSDVVESLAV GDNDFHFALV RLNGNPHTEF LLNTYHSKQE 100
VLSHIVNMSY IGGSNQTGKG LEYVIHSHLT EASGSRAADG VPQVIIVLTD 150
GQSEDGFALP SAELKSADVN VFAVGVEGAD ERALGEVASE PLSMHVFNLE 200
NVTSLHGLVG NLVSCIHSSV NPERAGDKES LKDITAQDSA DIIFLIDGSQ 250
NTGNANFDVI RDFLVNVLER LSVGNQQVQV GVVQYSEEPI TMFSLNSYPS 300
KAAVLDAVKG LSLVGGESAN IGQALDFVVE NHFTRAGGSR VEEGVPQVLV 350
LISAGPSSDE IRDSVVALKQ ASVFSFGLGA QAASRAELQH IATDDSLVFT 400
VPEFRSFGDL QEQILPYLVG VAQRHIVLQP PAIVTQVMEV NKRDIVFLVD 450
GSSSLGPSNF NAIRDFVTRV IQRLEIGQDL VQVSVAQYAD TVKPEFYLNS 500
YTNKRDAITA VRKMRALNGS ALYTGSSLDF VRNNLFTSSA GHRAAEGVPK 550
LLVLITGGKS LDEVSQPAQE LKRGSIMALA VGSKAADEDE LKEIAFDSSL 600
VFIPAEFRPA PLQNMLPSLM APLRTLTGTT EVHVNKRDII FLLDGSDNVG 650
KNNFPYVRDF VTNLVNSLDV GSDNIRVGLV QFSDTPVTEF SLDTYQTKSE 700
LLAHLRRLQL KGGSGLNAGS ALSYIHANHF TEAGGSRTRE HVPQLLLLLM 750
AGPSEDAYLQ AANALVRSGV LTFCVGTNRA DKAELEHIAF NPSLVYLMDD 800
FRSLPSLPQQ LIQPLTTYVS GGVQEVPLSQ PESKRDILFL FDGSVNVLGQ 850
FPAVRDFLYR IIEELDVKPD GTRVAIAQFS DDVRLESRFS EHQTKAEILN 900
LVKKMKLKTG KALNLGYALD YALRNIFVRS AGSRIEDNVQ QFLVLLVAGR 950
SSDAVAGPAS SLKQRGVVPF IFQAKNANPS ELEQIVLSPA FILAAESLPK 1000
IGDLQSQIVS LLKAEQGSGP VSGEKDVVFL IDGSEGVRSG FPLLKDFVQR 1050
VVESLDVGPD RVRVALVQYS DRTRPEFYLN SHMDQQGVIS AIRRLTLLGG 1100
PTPNTGAALE FVLRNILTSS TGSRIAEGVP QLLIVLTAEP SGDDVRGPSV 1150
VLKQGGAVPI GIGIGNADIS EMQTISFIPD FAVAIPTFRE LGTIQQVISE 1200
RVIQLNREEL SSLKPILTPS TGAGVGSKKD VVFLIDGSRN AGPEFQYIRT 1250
LIERIVEYLD IGFDTTRVAV IQFSEDSKME FPLNAHFSKD EVQNAVRRLR 1300
PKGGSQVYIG NALEYVLKNI FQRPLGSRIE EGVPQFLVLI SSGKSDDEVD 1350
DSAVELKQFG VAPLTIARHT DQEELVKISL SPEYVYSVST FRELPRLEQK 1400
LLTPITTLTS QQIHQILAST RYPPSVVESD AADIVFLIDS SDAVKPDGIA 1450
HIRDFVSRIV RRLNIGPSKV RIGVVQFSND VFPEFYLKTH KSQSSVLEAI 1500
RRLRFKGGSP LNTGRALEFV ARNLFVKSAG SRIEDGVPQH LVLFLGGKSQ 1550
DDVARHAQVI SSSGIVSLGI GDRNIDRTDL QTITNDPRLV FTVREFRELP 1600
NIEERVMLSF GPSGATPQPP GVDLPSPSRP EKKKADIVFL LDGSINFRRD 1650
SFQEVLRFAS EIVDTVYEDG DSIRVGLVQY NSDPTDEFFL RDFSTKRQII 1700
DAI 1703
Length:1,703
Mass (Da):185,729
Last modified:October 3, 2012 - v2
Checksum:iB12CA8944C16FB66
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1703 – 17031Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC110895 Genomic DNA. No translation available.
AC158773 Genomic DNA. No translation available.
FQ976558 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000130846; ENSMUSP00000115210; ENSMUSG00000048126.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC110895 Genomic DNA. No translation available.
AC158773 Genomic DNA. No translation available.
FQ976558 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortali D3YWD1.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi D3YWD1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000130846 ; ENSMUSP00000115210 ; ENSMUSG00000048126 .

Organism-specific databases

MGIi MGI:88461. Col6a3.

Phylogenomic databases

GeneTreei ENSGT00730000110647.
HOGENOMi HOG000168250.

Enzyme and pathway databases

Reactomei REACT_196606. ECM proteoglycans.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_216309. Integrin cell surface interactions.

Miscellaneous databases

NextBioi 35549073.
SOURCEi Search...

Gene expression databases

ArrayExpressi D3YWD1.
Bgeei D3YWD1.

Family and domain databases

Gene3Di 3.40.50.410. 9 hits.
InterProi IPR002035. VWF_A.
[Graphical view ]
Pfami PF00092. VWA. 9 hits.
[Graphical view ]
SMARTi SM00327. VWA. 8 hits.
[Graphical view ]
SUPFAMi SSF53300. SSF53300. 9 hits.
PROSITEi PS50234. VWFA. 9 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiD3YWD1_MOUSE
AccessioniPrimary (citable) accession number: D3YWD1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: October 3, 2012
Last modified: September 3, 2014
This is version 31 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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