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D3YWD1

- D3YWD1_MOUSE

UniProt

D3YWD1 - D3YWD1_MOUSE

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Protein
Submitted name:

Protein Col6a3

Gene

Col6a3

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Biological processi

  1. response to glucose Source: Ensembl
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_196606. ECM proteoglycans.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_216309. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Col6a3Imported
Gene namesi
Name:Col6a3Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 1

Organism-specific databases

MGIiMGI:88461. Col6a3.

Subcellular locationi

GO - Cellular componenti

  1. extracellular matrix Source: MGI
  2. extracellular space Source: MGI
  3. extracellular vesicular exosome Source: Ensembl
  4. sarcolemma Source: MGI
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiD3YWD1.

Expressioni

Gene expression databases

BgeeiD3YWD1.
ExpressionAtlasiD3YWD1. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliD3YWD1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000119051.
HOGENOMiHOG000168250.

Family and domain databases

Gene3Di3.40.50.410. 9 hits.
InterProiIPR002035. VWF_A.
[Graphical view]
PfamiPF00092. VWA. 9 hits.
[Graphical view]
SMARTiSM00327. VWA. 8 hits.
[Graphical view]
SUPFAMiSSF53300. SSF53300. 9 hits.
PROSITEiPS50234. VWFA. 9 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

D3YWD1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRKHRHLPLV AVFSLLLSGI ATTHAQQHGD VKNGAAADIV FLVDSSWSAG
60 70 80 90 100
KDRFLLVQEF LSDVVESLAV GDNDFHFALV RLNGNPHTEF LLNTYHSKQE
110 120 130 140 150
VLSHIVNMSY IGGSNQTGKG LEYVIHSHLT EASGSRAADG VPQVIIVLTD
160 170 180 190 200
GQSEDGFALP SAELKSADVN VFAVGVEGAD ERALGEVASE PLSMHVFNLE
210 220 230 240 250
NVTSLHGLVG NLVSCIHSSV NPERAGDKES LKDITAQDSA DIIFLIDGSQ
260 270 280 290 300
NTGNANFDVI RDFLVNVLER LSVGNQQVQV GVVQYSEEPI TMFSLNSYPS
310 320 330 340 350
KAAVLDAVKG LSLVGGESAN IGQALDFVVE NHFTRAGGSR VEEGVPQVLV
360 370 380 390 400
LISAGPSSDE IRDSVVALKQ ASVFSFGLGA QAASRAELQH IATDDSLVFT
410 420 430 440 450
VPEFRSFGDL QEQILPYLVG VAQRHIVLQP PAIVTQVMEV NKRDIVFLVD
460 470 480 490 500
GSSSLGPSNF NAIRDFVTRV IQRLEIGQDL VQVSVAQYAD TVKPEFYLNS
510 520 530 540 550
YTNKRDAITA VRKMRALNGS ALYTGSSLDF VRNNLFTSSA GHRAAEGVPK
560 570 580 590 600
LLVLITGGKS LDEVSQPAQE LKRGSIMALA VGSKAADEDE LKEIAFDSSL
610 620 630 640 650
VFIPAEFRPA PLQNMLPSLM APLRTLTGTT EVHVNKRDII FLLDGSDNVG
660 670 680 690 700
KNNFPYVRDF VTNLVNSLDV GSDNIRVGLV QFSDTPVTEF SLDTYQTKSE
710 720 730 740 750
LLAHLRRLQL KGGSGLNAGS ALSYIHANHF TEAGGSRTRE HVPQLLLLLM
760 770 780 790 800
AGPSEDAYLQ AANALVRSGV LTFCVGTNRA DKAELEHIAF NPSLVYLMDD
810 820 830 840 850
FRSLPSLPQQ LIQPLTTYVS GGVQEVPLSQ PESKRDILFL FDGSVNVLGQ
860 870 880 890 900
FPAVRDFLYR IIEELDVKPD GTRVAIAQFS DDVRLESRFS EHQTKAEILN
910 920 930 940 950
LVKKMKLKTG KALNLGYALD YALRNIFVRS AGSRIEDNVQ QFLVLLVAGR
960 970 980 990 1000
SSDAVAGPAS SLKQRGVVPF IFQAKNANPS ELEQIVLSPA FILAAESLPK
1010 1020 1030 1040 1050
IGDLQSQIVS LLKAEQGSGP VSGEKDVVFL IDGSEGVRSG FPLLKDFVQR
1060 1070 1080 1090 1100
VVESLDVGPD RVRVALVQYS DRTRPEFYLN SHMDQQGVIS AIRRLTLLGG
1110 1120 1130 1140 1150
PTPNTGAALE FVLRNILTSS TGSRIAEGVP QLLIVLTAEP SGDDVRGPSV
1160 1170 1180 1190 1200
VLKQGGAVPI GIGIGNADIS EMQTISFIPD FAVAIPTFRE LGTIQQVISE
1210 1220 1230 1240 1250
RVIQLNREEL SSLKPILTPS TGAGVGSKKD VVFLIDGSRN AGPEFQYIRT
1260 1270 1280 1290 1300
LIERIVEYLD IGFDTTRVAV IQFSEDSKME FPLNAHFSKD EVQNAVRRLR
1310 1320 1330 1340 1350
PKGGSQVYIG NALEYVLKNI FQRPLGSRIE EGVPQFLVLI SSGKSDDEVD
1360 1370 1380 1390 1400
DSAVELKQFG VAPLTIARHT DQEELVKISL SPEYVYSVST FRELPRLEQK
1410 1420 1430 1440 1450
LLTPITTLTS QQIHQILAST RYPPSVVESD AADIVFLIDS SDAVKPDGIA
1460 1470 1480 1490 1500
HIRDFVSRIV RRLNIGPSKV RIGVVQFSND VFPEFYLKTH KSQSSVLEAI
1510 1520 1530 1540 1550
RRLRFKGGSP LNTGRALEFV ARNLFVKSAG SRIEDGVPQH LVLFLGGKSQ
1560 1570 1580 1590 1600
DDVARHAQVI SSSGIVSLGI GDRNIDRTDL QTITNDPRLV FTVREFRELP
1610 1620 1630 1640 1650
NIEERVMLSF GPSGATPQPP GVDLPSPSRP EKKKADIVFL LDGSINFRRD
1660 1670 1680 1690 1700
SFQEVLRFAS EIVDTVYEDG DSIRVGLVQY NSDPTDEFFL RDFSTKRQII

DAI
Length:1,703
Mass (Da):185,729
Last modified:October 3, 2012 - v2
Checksum:iB12CA8944C16FB66
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1703 – 17031Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC110895 Genomic DNA. No translation available.
AC158773 Genomic DNA. No translation available.
FQ976558 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000130846; ENSMUSP00000115210; ENSMUSG00000048126.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC110895 Genomic DNA. No translation available.
AC158773 Genomic DNA. No translation available.
FQ976558 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortali D3YWD1.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi D3YWD1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000130846 ; ENSMUSP00000115210 ; ENSMUSG00000048126 .

Organism-specific databases

MGIi MGI:88461. Col6a3.

Phylogenomic databases

GeneTreei ENSGT00760000119051.
HOGENOMi HOG000168250.

Enzyme and pathway databases

Reactomei REACT_196606. ECM proteoglycans.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_216309. Integrin cell surface interactions.

Miscellaneous databases

NextBioi 35549073.
SOURCEi Search...

Gene expression databases

Bgeei D3YWD1.
ExpressionAtlasi D3YWD1. baseline and differential.

Family and domain databases

Gene3Di 3.40.50.410. 9 hits.
InterProi IPR002035. VWF_A.
[Graphical view ]
Pfami PF00092. VWA. 9 hits.
[Graphical view ]
SMARTi SM00327. VWA. 8 hits.
[Graphical view ]
SUPFAMi SSF53300. SSF53300. 9 hits.
PROSITEi PS50234. VWFA. 9 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiD3YWD1_MOUSE
AccessioniPrimary (citable) accession number: D3YWD1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: October 3, 2012
Last modified: October 29, 2014
This is version 33 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3