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D3YWD1

- D3YWD1_MOUSE

UniProt

D3YWD1 - D3YWD1_MOUSE

Protein
Submitted name:

Protein Col6a3

Gene

Col6a3

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 2 (03 Oct 2012)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    ReactomeiREACT_196606. ECM proteoglycans.
    REACT_198984. Collagen biosynthesis and modifying enzymes.
    REACT_199046. Assembly of collagen fibrils and other multimeric structures.
    REACT_199055. Collagen degradation.
    REACT_216309. Integrin cell surface interactions.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Col6a3Imported
    Gene namesi
    Name:Col6a3Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 1

    Organism-specific databases

    MGIiMGI:88461. Col6a3.

    Subcellular locationi

    GO - Cellular componenti

    1. extracellular matrix Source: MGI
    2. extracellular space Source: MGI
    3. sarcolemma Source: MGI

    PTM / Processingi

    Proteomic databases

    PRIDEiD3YWD1.

    Expressioni

    Gene expression databases

    ArrayExpressiD3YWD1.
    BgeeiD3YWD1.

    Structurei

    3D structure databases

    ProteinModelPortaliD3YWD1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00730000110647.
    HOGENOMiHOG000168250.

    Family and domain databases

    Gene3Di3.40.50.410. 9 hits.
    InterProiIPR002035. VWF_A.
    [Graphical view]
    PfamiPF00092. VWA. 9 hits.
    [Graphical view]
    SMARTiSM00327. VWA. 8 hits.
    [Graphical view]
    SUPFAMiSSF53300. SSF53300. 9 hits.
    PROSITEiPS50234. VWFA. 9 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    D3YWD1-1 [UniParc]FASTAAdd to Basket

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    MRKHRHLPLV AVFSLLLSGI ATTHAQQHGD VKNGAAADIV FLVDSSWSAG     50
    KDRFLLVQEF LSDVVESLAV GDNDFHFALV RLNGNPHTEF LLNTYHSKQE 100
    VLSHIVNMSY IGGSNQTGKG LEYVIHSHLT EASGSRAADG VPQVIIVLTD 150
    GQSEDGFALP SAELKSADVN VFAVGVEGAD ERALGEVASE PLSMHVFNLE 200
    NVTSLHGLVG NLVSCIHSSV NPERAGDKES LKDITAQDSA DIIFLIDGSQ 250
    NTGNANFDVI RDFLVNVLER LSVGNQQVQV GVVQYSEEPI TMFSLNSYPS 300
    KAAVLDAVKG LSLVGGESAN IGQALDFVVE NHFTRAGGSR VEEGVPQVLV 350
    LISAGPSSDE IRDSVVALKQ ASVFSFGLGA QAASRAELQH IATDDSLVFT 400
    VPEFRSFGDL QEQILPYLVG VAQRHIVLQP PAIVTQVMEV NKRDIVFLVD 450
    GSSSLGPSNF NAIRDFVTRV IQRLEIGQDL VQVSVAQYAD TVKPEFYLNS 500
    YTNKRDAITA VRKMRALNGS ALYTGSSLDF VRNNLFTSSA GHRAAEGVPK 550
    LLVLITGGKS LDEVSQPAQE LKRGSIMALA VGSKAADEDE LKEIAFDSSL 600
    VFIPAEFRPA PLQNMLPSLM APLRTLTGTT EVHVNKRDII FLLDGSDNVG 650
    KNNFPYVRDF VTNLVNSLDV GSDNIRVGLV QFSDTPVTEF SLDTYQTKSE 700
    LLAHLRRLQL KGGSGLNAGS ALSYIHANHF TEAGGSRTRE HVPQLLLLLM 750
    AGPSEDAYLQ AANALVRSGV LTFCVGTNRA DKAELEHIAF NPSLVYLMDD 800
    FRSLPSLPQQ LIQPLTTYVS GGVQEVPLSQ PESKRDILFL FDGSVNVLGQ 850
    FPAVRDFLYR IIEELDVKPD GTRVAIAQFS DDVRLESRFS EHQTKAEILN 900
    LVKKMKLKTG KALNLGYALD YALRNIFVRS AGSRIEDNVQ QFLVLLVAGR 950
    SSDAVAGPAS SLKQRGVVPF IFQAKNANPS ELEQIVLSPA FILAAESLPK 1000
    IGDLQSQIVS LLKAEQGSGP VSGEKDVVFL IDGSEGVRSG FPLLKDFVQR 1050
    VVESLDVGPD RVRVALVQYS DRTRPEFYLN SHMDQQGVIS AIRRLTLLGG 1100
    PTPNTGAALE FVLRNILTSS TGSRIAEGVP QLLIVLTAEP SGDDVRGPSV 1150
    VLKQGGAVPI GIGIGNADIS EMQTISFIPD FAVAIPTFRE LGTIQQVISE 1200
    RVIQLNREEL SSLKPILTPS TGAGVGSKKD VVFLIDGSRN AGPEFQYIRT 1250
    LIERIVEYLD IGFDTTRVAV IQFSEDSKME FPLNAHFSKD EVQNAVRRLR 1300
    PKGGSQVYIG NALEYVLKNI FQRPLGSRIE EGVPQFLVLI SSGKSDDEVD 1350
    DSAVELKQFG VAPLTIARHT DQEELVKISL SPEYVYSVST FRELPRLEQK 1400
    LLTPITTLTS QQIHQILAST RYPPSVVESD AADIVFLIDS SDAVKPDGIA 1450
    HIRDFVSRIV RRLNIGPSKV RIGVVQFSND VFPEFYLKTH KSQSSVLEAI 1500
    RRLRFKGGSP LNTGRALEFV ARNLFVKSAG SRIEDGVPQH LVLFLGGKSQ 1550
    DDVARHAQVI SSSGIVSLGI GDRNIDRTDL QTITNDPRLV FTVREFRELP 1600
    NIEERVMLSF GPSGATPQPP GVDLPSPSRP EKKKADIVFL LDGSINFRRD 1650
    SFQEVLRFAS EIVDTVYEDG DSIRVGLVQY NSDPTDEFFL RDFSTKRQII 1700
    DAI 1703
    Length:1,703
    Mass (Da):185,729
    Last modified:October 3, 2012 - v2
    Checksum:iB12CA8944C16FB66
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1703 – 17031Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC110895 Genomic DNA. No translation available.
    AC158773 Genomic DNA. No translation available.
    FQ976558 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSMUST00000130846; ENSMUSP00000115210; ENSMUSG00000048126.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC110895 Genomic DNA. No translation available.
    AC158773 Genomic DNA. No translation available.
    FQ976558 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali D3YWD1.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi D3YWD1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000130846 ; ENSMUSP00000115210 ; ENSMUSG00000048126 .

    Organism-specific databases

    MGIi MGI:88461. Col6a3.

    Phylogenomic databases

    GeneTreei ENSGT00730000110647.
    HOGENOMi HOG000168250.

    Enzyme and pathway databases

    Reactomei REACT_196606. ECM proteoglycans.
    REACT_198984. Collagen biosynthesis and modifying enzymes.
    REACT_199046. Assembly of collagen fibrils and other multimeric structures.
    REACT_199055. Collagen degradation.
    REACT_216309. Integrin cell surface interactions.

    Miscellaneous databases

    NextBioi 35549073.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi D3YWD1.
    Bgeei D3YWD1.

    Family and domain databases

    Gene3Di 3.40.50.410. 9 hits.
    InterProi IPR002035. VWF_A.
    [Graphical view ]
    Pfami PF00092. VWA. 9 hits.
    [Graphical view ]
    SMARTi SM00327. VWA. 8 hits.
    [Graphical view ]
    SUPFAMi SSF53300. SSF53300. 9 hits.
    PROSITEi PS50234. VWFA. 9 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (MAY-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiD3YWD1_MOUSE
    AccessioniPrimary (citable) accession number: D3YWD1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: October 3, 2012
    Last modified: October 1, 2014
    This is version 32 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3