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D3VH32

- D3VH32_XENNA

UniProt

D3VH32 - D3VH32_XENNA

Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotationSAAS annotation

    Catalytic activityi

    Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotation

    Cofactori

    Magnesium.UniRule annotationSAAS annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei137 – 1371UniRule annotation
    Active sitei545 – 5451UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. carbon fixation Source: UniProtKB-HAMAP
    2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
    3. tricarboxylic acid cycle Source: InterPro

    Keywords - Molecular functioni

    LyaseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbon dioxide fixationUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, PyruvateImported

    Enzyme and pathway databases

    BioCyciXNEM406817:GHY4-226-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
    Short name:
    PEPCUniRule annotation
    Short name:
    PEPCaseUniRule annotation
    Gene namesi
    Name:ppcUniRule annotationImported
    Ordered Locus Names:XNC1_0229Imported
    OrganismiXenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)Imported
    Taxonomic identifieri406817 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeXenorhabdus
    ProteomesiUP000008075: Chromosome

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PEPCase type 1 family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000238648.
    KOiK01595.

    Family and domain databases

    HAMAPiMF_00595. PEPcase_type1.
    InterProiIPR021135. PEP_COase.
    IPR018129. PEP_COase_AS.
    IPR022805. PEP_COase_bac/pln-type.
    IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
    [Graphical view]
    PfamiPF00311. PEPcase. 1 hit.
    [Graphical view]
    PRINTSiPR00150. PEPCARBXLASE.
    SUPFAMiSSF51621. SSF51621. 1 hit.
    PROSITEiPS00781. PEPCASE_1. 1 hit.
    PS00393. PEPCASE_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3VH32-1 [UniParc]FASTAAdd to Basket

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    MNQQYSAMRS NVSMLGKLLG DTIKEALGED ILDKVETIRK LSKSSRAGNE    50
    VHRQQLLSTL ENLSNDELLP VARAFNQFLN LANAAEQYHS ISPHGEAASN 100
    PVALAALFNR LKDKQFSNDD LVKAIDELAI ELVLTAHPTE IARRTLIHKL 150
    VEVNGCLAQL DHDDLADYER NNIMRRLRQL IAQSWHTDEI RKIRPTPIDE 200
    AKWGFAVVEN SLWEGVPAFL REFNEQLEES IGYSLPVEAV PVRFTSWMGG 250
    DRDGNPNVTA DITRHVLLLS RWKAADLFLK DIQILVSELS MSECTPEVRQ 300
    MAGGDHVLEP YREIAKQLRT QLSHTLAYLE KCLKGEQVLP PSDLLLHNEQ 350
    LWQPLYACYQ SLKACGMEII ANGQLLDTLR RIRCFGLCLV RIDIRQESTR 400
    HTDAIAELTQ YLEMGDYASW PEAEKQAFLL HELNSKRPLT PRDWQPSAET 450
    QEVFETCKVI AETPQDAIAA YVISMAKVPS DVLAVKLLLK EAGCSLSLPV 500
    APLFETLDDL NNAESVIRKL LGITWYRELI QDKQMVMIGY SDSAKDAGVM 550
    AASWAQYQAQ DALIKVCEQE GVTLTLFHGR GGTIGRGGAP AHSALLSQPP 600
    GSLKGGLRVT EQGEMIRFKF GLPQVAISSL ALYASAILEA NLLPPPEPKP 650
    EWRQIMGILS DVSCNMYRDY VREQPEFVPY FRAATPEQEL AKLPLGSRPA 700
    KRRPTGGVES LRAIPWIFAW TQNRLMLPTW LGAGAALQQV IDAGKLSVLT 750
    DMSRDWPFFN TRIAMLEMVF AKADLWLAEY YDQRLVDPKL WPLGLKLRNQ 800
    LAEDIKTVLT ISQDEQLMAD LPWIAESIAL RNVYTDPLNV LQVELLQRSR 850
    QQEEALDPHL EQALMVTIAG VAAGMRNTG 879
    Length:879
    Mass (Da):98,605
    Last modified:April 20, 2010 - v1
    Checksum:i81E50940A6F8C677
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN667742 Genomic DNA. Translation: CBJ88317.1.
    RefSeqiYP_003710569.1. NC_014228.1.

    Genome annotation databases

    EnsemblBacteriaiCBJ88317; CBJ88317; XNC1_0229.
    GeneIDi9433012.
    KEGGixne:XNC1_0229.
    PATRICi42460393. VBIXenNem38452_0215.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN667742 Genomic DNA. Translation: CBJ88317.1 .
    RefSeqi YP_003710569.1. NC_014228.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBJ88317 ; CBJ88317 ; XNC1_0229 .
    GeneIDi 9433012.
    KEGGi xne:XNC1_0229.
    PATRICi 42460393. VBIXenNem38452_0215.

    Phylogenomic databases

    HOGENOMi HOG000238648.
    KOi K01595.

    Enzyme and pathway databases

    BioCyci XNEM406817:GHY4-226-MONOMER.

    Family and domain databases

    HAMAPi MF_00595. PEPcase_type1.
    InterProi IPR021135. PEP_COase.
    IPR018129. PEP_COase_AS.
    IPR022805. PEP_COase_bac/pln-type.
    IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
    [Graphical view ]
    Pfami PF00311. PEPcase. 1 hit.
    [Graphical view ]
    PRINTSi PR00150. PEPCARBXLASE.
    SUPFAMi SSF51621. SSF51621. 1 hit.
    PROSITEi PS00781. PEPCASE_1. 1 hit.
    PS00393. PEPCASE_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
      Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
      Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6Imported.
    2. "The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus: convergent lifestyles from divergent genomes."
      Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E., Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C., de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E., Jewell K.A., Knack J.J.
      , Krasomil-Osterfeld K.C., Kukor R., Lanois A., Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X., Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M., Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D., Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z., Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R., Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S., Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.
      PLoS ONE 6:e27909-e27909(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6Imported.

    Entry informationi

    Entry nameiD3VH32_XENNA
    AccessioniPrimary (citable) accession number: D3VH32
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3