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D3VH32

- D3VH32_XENNA

UniProt

D3VH32 - D3VH32_XENNA

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Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotationSAAS annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotation

Cofactori

Note: Magnesium.UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei137 – 1371UniRule annotation
Active sitei545 – 5451UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, PyruvateImported

Enzyme and pathway databases

BioCyciXNEM406817:GHY4-226-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotationImported
Ordered Locus Names:XNC1_0229Imported
OrganismiXenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)Imported
Taxonomic identifieri406817 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeXenorhabdus
ProteomesiUP000008075: Chromosome

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000238648.
KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3VH32-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MNQQYSAMRS NVSMLGKLLG DTIKEALGED ILDKVETIRK LSKSSRAGNE
60 70 80 90 100
VHRQQLLSTL ENLSNDELLP VARAFNQFLN LANAAEQYHS ISPHGEAASN
110 120 130 140 150
PVALAALFNR LKDKQFSNDD LVKAIDELAI ELVLTAHPTE IARRTLIHKL
160 170 180 190 200
VEVNGCLAQL DHDDLADYER NNIMRRLRQL IAQSWHTDEI RKIRPTPIDE
210 220 230 240 250
AKWGFAVVEN SLWEGVPAFL REFNEQLEES IGYSLPVEAV PVRFTSWMGG
260 270 280 290 300
DRDGNPNVTA DITRHVLLLS RWKAADLFLK DIQILVSELS MSECTPEVRQ
310 320 330 340 350
MAGGDHVLEP YREIAKQLRT QLSHTLAYLE KCLKGEQVLP PSDLLLHNEQ
360 370 380 390 400
LWQPLYACYQ SLKACGMEII ANGQLLDTLR RIRCFGLCLV RIDIRQESTR
410 420 430 440 450
HTDAIAELTQ YLEMGDYASW PEAEKQAFLL HELNSKRPLT PRDWQPSAET
460 470 480 490 500
QEVFETCKVI AETPQDAIAA YVISMAKVPS DVLAVKLLLK EAGCSLSLPV
510 520 530 540 550
APLFETLDDL NNAESVIRKL LGITWYRELI QDKQMVMIGY SDSAKDAGVM
560 570 580 590 600
AASWAQYQAQ DALIKVCEQE GVTLTLFHGR GGTIGRGGAP AHSALLSQPP
610 620 630 640 650
GSLKGGLRVT EQGEMIRFKF GLPQVAISSL ALYASAILEA NLLPPPEPKP
660 670 680 690 700
EWRQIMGILS DVSCNMYRDY VREQPEFVPY FRAATPEQEL AKLPLGSRPA
710 720 730 740 750
KRRPTGGVES LRAIPWIFAW TQNRLMLPTW LGAGAALQQV IDAGKLSVLT
760 770 780 790 800
DMSRDWPFFN TRIAMLEMVF AKADLWLAEY YDQRLVDPKL WPLGLKLRNQ
810 820 830 840 850
LAEDIKTVLT ISQDEQLMAD LPWIAESIAL RNVYTDPLNV LQVELLQRSR
860 870
QQEEALDPHL EQALMVTIAG VAAGMRNTG
Length:879
Mass (Da):98,605
Last modified:April 20, 2010 - v1
Checksum:i81E50940A6F8C677
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN667742 Genomic DNA. Translation: CBJ88317.1.
RefSeqiWP_013183169.1. NC_014228.1.
YP_003710569.1. NC_014228.1.

Genome annotation databases

EnsemblBacteriaiCBJ88317; CBJ88317; XNC1_0229.
GeneIDi9433012.
KEGGixne:XNC1_0229.
PATRICi42460393. VBIXenNem38452_0215.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN667742 Genomic DNA. Translation: CBJ88317.1 .
RefSeqi WP_013183169.1. NC_014228.1.
YP_003710569.1. NC_014228.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBJ88317 ; CBJ88317 ; XNC1_0229 .
GeneIDi 9433012.
KEGGi xne:XNC1_0229.
PATRICi 42460393. VBIXenNem38452_0215.

Phylogenomic databases

HOGENOMi HOG000238648.
KOi K01595.

Enzyme and pathway databases

BioCyci XNEM406817:GHY4-226-MONOMER.

Family and domain databases

HAMAPi MF_00595. PEPcase_type1.
InterProi IPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view ]
Pfami PF00311. PEPcase. 1 hit.
[Graphical view ]
PRINTSi PR00150. PEPCARBXLASE.
SUPFAMi SSF51621. SSF51621. 1 hit.
PROSITEi PS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
    Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6Imported.
  2. "The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus: convergent lifestyles from divergent genomes."
    Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E., Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C., de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E., Jewell K.A., Knack J.J.
    , Krasomil-Osterfeld K.C., Kukor R., Lanois A., Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X., Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M., Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D., Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z., Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R., Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S., Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.
    PLoS ONE 6:e27909-e27909(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6Imported.

Entry informationi

Entry nameiD3VH32_XENNA
AccessioniPrimary (citable) accession number: D3VH32
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 26, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3