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D3VEI5 (D3VEI5_XENNA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length562 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
D3VEI5 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: AF543C69B74D8593

FASTA56263,158
        10         20         30         40         50         60 
MLHFLDSLNR DEADKMTPDT SCVNEQEWQA LLNQFISHVD GEKLLELETG IAGDPVTYCR 

        70         80         90        100        110        120 
RELNKPVCEL TELEKLFSCV TIPEFPVETE SYVRHLGEDV FNQVVPVSSP AFVGHMTSAL 

       130        140        150        160        170        180 
PNHLPALSKI LTALNQNLVK LETSHVLTAL ERQVLGMMHK LVYHRDDDFY HQWLHNGDHA 

       190        200        210        220        230        240 
LATFCSGGTL ANLTAMWACR NKLMPAEGDF AGLAREGLAR GLLHYGYNGL AILVSELGHY 

       250        260        270        280        290        300 
SLKKTVDVLG LGQDALVKVD TDRNGRICID DLRVQLQSLR ERNIKPMAIV GIAGTTETGA 

       310        320        330        340        350        360 
IDPLDVLADI AEREQCHFHV DAAWGGASLL SERYRHLFAG IERADTVTID AHKQMYVPMG 

       370        380        390        400        410        420 
AGMVLFRQPT LSDAIAQHAN YIVRKGSKDL GRHTLEGSRS AMSLMLHSNF HLLGRRGLGH 

       430        440        450        460        470        480 
LIDAGIEKAQ QFADLIRQQE DFELISEPQL CLLTYRYVSQ EMLQTLREGS ETVKQKLYEA 

       490        500        510        520        530        540 
LNALNQSIQT MQWTAGHSFV SRTCLRPPQW ARQPTIVFRV VLANPLTTLE ILENMLQEQR 

       550        560 
QLAQQSPYWQ ALQDLFPIKY DS 

« Hide

References

[1]"Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.
[2]"The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus: convergent lifestyles from divergent genomes."
Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E., Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C., de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E., Jewell K.A., Knack J.J. expand/collapse author list , Krasomil-Osterfeld K.C., Kukor R., Lanois A., Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X., Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M., Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D., Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z., Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R., Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S., Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.
PLoS ONE 6:e27909-e27909(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN667742 Genomic DNA. Translation: CBJ90097.1.
RefSeqYP_003712277.1. NC_014228.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBJ90097; CBJ90097; XNC1_2037.
GeneID9433153.
KEGGxne:XNC1_2037.
PATRIC42463796. VBIXenNem38452_1867.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000282553.
KOK01580.

Enzyme and pathway databases

BioCycXNEM406817:GHY4-2038-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR018247. EF_Hand_1_Ca_BS.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
PROSITEPS00018. EF_HAND_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3VEI5_XENNA
AccessionPrimary (citable) accession number: D3VEI5
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: June 11, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)