D3VEI5 (D3VEI5_XENNA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pyridoxal-dependent decarboxylase EMBL CBJ90097.1
EC=4.1.1.29 EMBL CBJ90097.1

Gene names

Ordered Locus Names:

XNC1_2037 EMBL CBJ90097.1

Organism

Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) [Complete proteome] [HAMAP] EMBL CBJ90097.1

Taxonomic identifier

406817 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Xenorhabdus › Xenorhabdus nematophilus

Protein attributes

Sequence length	562 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382 EMBL CBJ90097.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro sulfinoalanine decarboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3VEI5 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: AF543C69B74D8593	FASTA	562	63,158
	10 20 30 40 50 60 MLHFLDSLNR DEADKMTPDT SCVNEQEWQA LLNQFISHVD GEKLLELETG IAGDPVTYCR 70 80 90 100 110 120 RELNKPVCEL TELEKLFSCV TIPEFPVETE SYVRHLGEDV FNQVVPVSSP AFVGHMTSAL 130 140 150 160 170 180 PNHLPALSKI LTALNQNLVK LETSHVLTAL ERQVLGMMHK LVYHRDDDFY HQWLHNGDHA 190 200 210 220 230 240 LATFCSGGTL ANLTAMWACR NKLMPAEGDF AGLAREGLAR GLLHYGYNGL AILVSELGHY 250 260 270 280 290 300 SLKKTVDVLG LGQDALVKVD TDRNGRICID DLRVQLQSLR ERNIKPMAIV GIAGTTETGA 310 320 330 340 350 360 IDPLDVLADI AEREQCHFHV DAAWGGASLL SERYRHLFAG IERADTVTID AHKQMYVPMG 370 380 390 400 410 420 AGMVLFRQPT LSDAIAQHAN YIVRKGSKDL GRHTLEGSRS AMSLMLHSNF HLLGRRGLGH 430 440 450 460 470 480 LIDAGIEKAQ QFADLIRQQE DFELISEPQL CLLTYRYVSQ EMLQTLREGS ETVKQKLYEA 490 500 510 520 530 540 LNALNQSIQT MQWTAGHSFV SRTCLRPPQW ARQPTIVFRV VLANPLTTLE ILENMLQEQR 550 560 QLAQQSPYWQ ALQDLFPIKY DS

References

[1]

"Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)." Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G. Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FN667742 Genomic DNA. Translation: CBJ90097.1.
RefSeq	YP_003712277.1. NC_014228.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBJ90097; CBJ90097; XNC1_2037.
GeneID	9433153.
KEGG	xne:XNC1_2037.
PATRIC	42463796. VBIXenNem38452_1867.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000282553.
KO	K01580.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR022517. Asp_decarboxylase_pyridox. IPR018247. EF_Hand_1_Ca_BS. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR03799. NOD_PanD_pyr. 1 hit.
PROSITE	PS00018. EF_HAND_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D3VEI5_XENNA

Accession

Primary (citable) accession number: D3VEI5

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)