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Protein
Submitted name:

Chromosome, complete genome

Gene

XNC1_2037

Organism
Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. pyridoxal phosphate binding Source: InterPro
  2. sulfinoalanine decarboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciXNEM406817:GHY4-2038-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Chromosome, complete genomeImported (EC:4.1.1.29Imported)
Gene namesi
Ordered Locus Names:XNC1_2037Imported
OrganismiXenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)Imported
Taxonomic identifieri406817 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeXenorhabdus
ProteomesiUP000008075 Componenti: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR018247. EF_Hand_1_Ca_BS.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
PROSITEiPS00018. EF_HAND_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3VEI5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLHFLDSLNR DEADKMTPDT SCVNEQEWQA LLNQFISHVD GEKLLELETG
60 70 80 90 100
IAGDPVTYCR RELNKPVCEL TELEKLFSCV TIPEFPVETE SYVRHLGEDV
110 120 130 140 150
FNQVVPVSSP AFVGHMTSAL PNHLPALSKI LTALNQNLVK LETSHVLTAL
160 170 180 190 200
ERQVLGMMHK LVYHRDDDFY HQWLHNGDHA LATFCSGGTL ANLTAMWACR
210 220 230 240 250
NKLMPAEGDF AGLAREGLAR GLLHYGYNGL AILVSELGHY SLKKTVDVLG
260 270 280 290 300
LGQDALVKVD TDRNGRICID DLRVQLQSLR ERNIKPMAIV GIAGTTETGA
310 320 330 340 350
IDPLDVLADI AEREQCHFHV DAAWGGASLL SERYRHLFAG IERADTVTID
360 370 380 390 400
AHKQMYVPMG AGMVLFRQPT LSDAIAQHAN YIVRKGSKDL GRHTLEGSRS
410 420 430 440 450
AMSLMLHSNF HLLGRRGLGH LIDAGIEKAQ QFADLIRQQE DFELISEPQL
460 470 480 490 500
CLLTYRYVSQ EMLQTLREGS ETVKQKLYEA LNALNQSIQT MQWTAGHSFV
510 520 530 540 550
SRTCLRPPQW ARQPTIVFRV VLANPLTTLE ILENMLQEQR QLAQQSPYWQ
560
ALQDLFPIKY DS
Length:562
Mass (Da):63,158
Last modified:April 20, 2010 - v1
Checksum:iAF543C69B74D8593
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN667742 Genomic DNA. Translation: CBJ90097.1.
RefSeqiWP_013184215.1. NC_014228.1.
YP_003712277.1. NC_014228.1.

Genome annotation databases

EnsemblBacteriaiCBJ90097; CBJ90097; XNC1_2037.
KEGGixne:XNC1_2037.
PATRICi42463796. VBIXenNem38452_1867.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN667742 Genomic DNA. Translation: CBJ90097.1.
RefSeqiWP_013184215.1. NC_014228.1.
YP_003712277.1. NC_014228.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBJ90097; CBJ90097; XNC1_2037.
KEGGixne:XNC1_2037.
PATRICi42463796. VBIXenNem38452_1867.

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.

Enzyme and pathway databases

BioCyciXNEM406817:GHY4-2038-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR018247. EF_Hand_1_Ca_BS.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
PROSITEiPS00018. EF_HAND_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
    Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6Imported.
  2. "The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus: convergent lifestyles from divergent genomes."
    Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E., Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C., de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E., Jewell K.A., Knack J.J.
    , Krasomil-Osterfeld K.C., Kukor R., Lanois A., Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X., Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M., Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D., Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z., Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R., Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S., Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.
    PLoS ONE 6:e27909-e27909(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6Imported.

Entry informationi

Entry nameiD3VEI5_XENNA
AccessioniPrimary (citable) accession number: D3VEI5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 29, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.