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D3VEI5

- D3VEI5_XENNA

UniProt

D3VEI5 - D3VEI5_XENNA

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Protein
Submitted name: Pyridoxal-dependent decarboxylase
Gene
XNC1_2037
Organism
Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Pyridoxal phosphate By similarity.UniRule annotation

GO - Molecular functioni

  1. pyridoxal phosphate binding Source: InterPro
  2. sulfinoalanine decarboxylase activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciXNEM406817:GHY4-2038-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported (EC:4.1.1.29Imported)
Gene namesi
Ordered Locus Names:XNC1_2037Imported
OrganismiXenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)Imported
Taxonomic identifieri406817 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeXenorhabdus
ProteomesiUP000008075: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR018247. EF_Hand_1_Ca_BS.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
PROSITEiPS00018. EF_HAND_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3VEI5-1 [UniParc]FASTAAdd to Basket

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MLHFLDSLNR DEADKMTPDT SCVNEQEWQA LLNQFISHVD GEKLLELETG    50
IAGDPVTYCR RELNKPVCEL TELEKLFSCV TIPEFPVETE SYVRHLGEDV 100
FNQVVPVSSP AFVGHMTSAL PNHLPALSKI LTALNQNLVK LETSHVLTAL 150
ERQVLGMMHK LVYHRDDDFY HQWLHNGDHA LATFCSGGTL ANLTAMWACR 200
NKLMPAEGDF AGLAREGLAR GLLHYGYNGL AILVSELGHY SLKKTVDVLG 250
LGQDALVKVD TDRNGRICID DLRVQLQSLR ERNIKPMAIV GIAGTTETGA 300
IDPLDVLADI AEREQCHFHV DAAWGGASLL SERYRHLFAG IERADTVTID 350
AHKQMYVPMG AGMVLFRQPT LSDAIAQHAN YIVRKGSKDL GRHTLEGSRS 400
AMSLMLHSNF HLLGRRGLGH LIDAGIEKAQ QFADLIRQQE DFELISEPQL 450
CLLTYRYVSQ EMLQTLREGS ETVKQKLYEA LNALNQSIQT MQWTAGHSFV 500
SRTCLRPPQW ARQPTIVFRV VLANPLTTLE ILENMLQEQR QLAQQSPYWQ 550
ALQDLFPIKY DS 562
Length:562
Mass (Da):63,158
Last modified:April 20, 2010 - v1
Checksum:iAF543C69B74D8593
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN667742 Genomic DNA. Translation: CBJ90097.1.
RefSeqiWP_013184215.1. NC_014228.1.
YP_003712277.1. NC_014228.1.

Genome annotation databases

EnsemblBacteriaiCBJ90097; CBJ90097; XNC1_2037.
GeneIDi9433153.
KEGGixne:XNC1_2037.
PATRICi42463796. VBIXenNem38452_1867.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN667742 Genomic DNA. Translation: CBJ90097.1 .
RefSeqi WP_013184215.1. NC_014228.1.
YP_003712277.1. NC_014228.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBJ90097 ; CBJ90097 ; XNC1_2037 .
GeneIDi 9433153.
KEGGi xne:XNC1_2037.
PATRICi 42463796. VBIXenNem38452_1867.

Phylogenomic databases

HOGENOMi HOG000282553.
KOi K01580.

Enzyme and pathway databases

BioCyci XNEM406817:GHY4-2038-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR022517. Asp_decarboxylase_pyridox.
IPR018247. EF_Hand_1_Ca_BS.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR03799. NOD_PanD_pyr. 1 hit.
PROSITEi PS00018. EF_HAND_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
    Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.
  2. "The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus: convergent lifestyles from divergent genomes."
    Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E., Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C., de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E., Jewell K.A., Knack J.J.
    , Krasomil-Osterfeld K.C., Kukor R., Lanois A., Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X., Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M., Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D., Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z., Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R., Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S., Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.
    PLoS ONE 6:e27909-e27909(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.

Entry informationi

Entry nameiD3VEI5_XENNA
AccessioniPrimary (citable) accession number: D3VEI5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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