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D3VDJ3 (D3VDJ3_XENNA) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length410 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS009006

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site741Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site3001Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1731Substrate By similarity HAMAP-Rule MF_01201
Binding site3481Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue741N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
D3VDJ3 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: B414A1BAB5AA2BD3

FASTA41044,703
        10         20         30         40         50         60 
MRLNKTTLAI LLGLSLYQGA AQAAPVLSSD NTQAKRVAAH NNAWVEINTT TFENNIHILQ 

        70         80         90        100        110        120 
QKLNRNTKMC AVLKGDAYGH GIGLLMPSVI KTGVLCVGIT SNEEARIVRE SGFKGQLIRI 

       130        140        150        160        170        180 
RTADVSEIES TLGYDMEEII GDLAHAKTVA DLAKKHGKEI RVHLALNTGL MSRNGLEMKT 

       190        200        210        220        230        240 
EQGKQEALKM TQLPNLKLVG IMSHHALTDL DAIRDSIKNF NEQTAWLIKA ANLKRDEITL 

       250        260        270        280        290        300 
HASSSFASVS IPEAQFDMVR VGSALYGILT NTHPEFKPLI QVKTHVASVK SYPKGNGVSY 

       310        320        330        340        350        360 
NNTYILKRDS KLANLPVGFS DGFSSSLSNK AYVLINGHRA PVVGSVSMNT VMADVTDLPE 

       370        380        390        400        410 
VKSGDEVVIF GKQGNEEITQ SDIQKWGGMH VVEFSSIWGE TNPRIVTTDA 

« Hide

References

[1]"Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN667742 Genomic DNA. Translation: CBJ92233.1.
RefSeqYP_003714309.1. NC_014228.1.

3D structure databases

ProteinModelPortalD3VDJ3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBJ92233; CBJ92233; XNC1_4208.
GeneID9431944.
KEGGxne:XNC1_4208.
PATRIC42467876. VBIXenNem38452_3869.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000279190.
KOK01775.

Enzyme and pathway databases

BioCycXNEM406817:GHY4-4189-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3VDJ3_XENNA
AccessionPrimary (citable) accession number: D3VDJ3
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: February 19, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)