D3VDJ3 (D3VDJ3_XENNA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Ordered Locus Names:

XNC1_4208 EMBL CBJ92233.1

Organism

Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) [Complete proteome] [HAMAP] EMBL CBJ92233.1

Taxonomic identifier

406817 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Xenorhabdus › Xenorhabdus nematophilus

Protein attributes

Sequence length	410 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL CBJ92233.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3VDJ3 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: B414A1BAB5AA2BD3	FASTA	410	44,703
	10 20 30 40 50 60 MRLNKTTLAI LLGLSLYQGA AQAAPVLSSD NTQAKRVAAH NNAWVEINTT TFENNIHILQ 70 80 90 100 110 120 QKLNRNTKMC AVLKGDAYGH GIGLLMPSVI KTGVLCVGIT SNEEARIVRE SGFKGQLIRI 130 140 150 160 170 180 RTADVSEIES TLGYDMEEII GDLAHAKTVA DLAKKHGKEI RVHLALNTGL MSRNGLEMKT 190 200 210 220 230 240 EQGKQEALKM TQLPNLKLVG IMSHHALTDL DAIRDSIKNF NEQTAWLIKA ANLKRDEITL 250 260 270 280 290 300 HASSSFASVS IPEAQFDMVR VGSALYGILT NTHPEFKPLI QVKTHVASVK SYPKGNGVSY 310 320 330 340 350 360 NNTYILKRDS KLANLPVGFS DGFSSSLSNK AYVLINGHRA PVVGSVSMNT VMADVTDLPE 370 380 390 400 410 VKSGDEVVIF GKQGNEEITQ SDIQKWGGMH VVEFSSIWGE TNPRIVTTDA

References

[1]

"Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)." Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G. Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FN667742 Genomic DNA. Translation: CBJ92233.1.
RefSeq	YP_003714309.1. NC_014228.1.
3D structure databases
ProteinModelPortal	D3VDJ3.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBJ92233; CBJ92233; XNC1_4208.
GeneID	9431944.
KEGG	xne:XNC1_4208.
PATRIC	42467876. VBIXenNem38452_3869.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000279190.
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D3VDJ3_XENNA

Accession

Primary (citable) accession number: D3VDJ3

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)