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Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Xenorhabdus bovienii (strain SS-2004)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotationSAAS annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotation

Cofactori

Mg2+UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei137 – 1371UniRule annotation
Active sitei545 – 5451UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, PyruvateImported

Enzyme and pathway databases

BioCyciXBOV406818:GHLH-4278-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotationSAAS annotation (EC:4.1.1.31UniRule annotationSAAS annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotationImported
Ordered Locus Names:XBJ1_4275Imported
OrganismiXenorhabdus bovienii (strain SS-2004)Imported
Taxonomic identifieri406818 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeXenorhabdus
ProteomesiUP000002045 Componenti: Chromosome

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000238648.
KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3V6U9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNQQYSAMRS NVSMLGKLLG NTIKEALGES ILDKVETIRK LSKSSRAGNE
60 70 80 90 100
ADRQQLLSTL QNLSNDELLP VARAFNQFLN LANVAEQYHS ISPHGEAASN
110 120 130 140 150
PVALEALFNR LKDKKFSNDD LINAVNELAI ELVLTAHPTE IARRTLIHKL
160 170 180 190 200
VEVNACLSQL DHDDLADYER INIMRRLRQL IAQSWHTDEI RKIRPTPIDE
210 220 230 240 250
AKWGFAVVEN SLWEGVPAFL REFNEQLEES IGYSLPVEAV PIRFTSWMGG
260 270 280 290 300
DRDGNPNVTA EITRHVLLLS RWKAADLFLK DIQVLVSELS MSECTPELRQ
310 320 330 340 350
LAGGDGVLEP YREIAKQLRT QLNSTLTYLE KHLKGERVLP PVGLLLHNEQ
360 370 380 390 400
LWQPLYACYQ SLKTCGMEII ANGQLLDTLR RIRCFGLSLV RIDIRQESTR
410 420 430 440 450
HTDAIAELTQ YLELGDYASW SETEKQTFLL RELNSKRPLI PHCWQPSEET
460 470 480 490 500
LEVFETCKVI AESPQDAIAA YVISMAKVPS DVLAVKLLLK EAGCSLKLPV
510 520 530 540 550
APLFETLDDL NNAESVIQQL LGIGWYRELI QDKQMVMIGY SDSAKDAGVM
560 570 580 590 600
AASWAQYRAQ DALIKVCEQE SVTLTLFHGR GGTIGRGGAP AHSALLSQPP
610 620 630 640 650
GSLKGGLRVT EQGEMIRFKF GLPQVTISSL ALYASAILEA NLLPPPEPKP
660 670 680 690 700
EWKQVMDTLS DVSCDMYRDY VREQPEFVPY FRAATPEQEL AKLPLGSRPA
710 720 730 740 750
KRRPTGGVES LRAIPWIFAW TQNRLMLPAW LGAGAALQHV IDAGKLSVLA
760 770 780 790 800
DMCRDWPFFN TRIAMLEMVF AKADLWLAEY YDQRLVDKKL WPLGITLRNQ
810 820 830 840 850
LAEDIKTVLT ISQDEQLMAD LPWIAESIAL RNVYTDPLNV LQAELLQRSR
860 870
QQEQPDPHLE QALMVTIAGV AAGMRNTG
Length:878
Mass (Da):98,568
Last modified:April 20, 2010 - v1
Checksum:iD6618FB5E0E06858
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN667741 Genomic DNA. Translation: CBJ83378.1.
RefSeqiYP_003470136.1. NC_013892.1.

Genome annotation databases

EnsemblBacteriaiCBJ83378; CBJ83378; XBJ1_4275.
KEGGixbo:XBJ1_4275.
PATRICi35303115. VBIXenBov95754_3849.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN667741 Genomic DNA. Translation: CBJ83378.1.
RefSeqiYP_003470136.1. NC_013892.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBJ83378; CBJ83378; XBJ1_4275.
KEGGixbo:XBJ1_4275.
PATRICi35303115. VBIXenBov95754_3849.

Phylogenomic databases

HOGENOMiHOG000238648.
KOiK01595.

Enzyme and pathway databases

BioCyciXBOV406818:GHLH-4278-MONOMER.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
    Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
    Submitted (JAN-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SS-2004Imported.
  2. "The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus: convergent lifestyles from divergent genomes."
    Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E., Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C., de Leon L., Drace K., Du Z., Givaudan A., Herbert Tran E.E., Jewell K.A., Knack J.J.
    , Krasomil-Osterfeld K.C., Kukor R., Lanois A., Latreille P., Leimgruber N.K., Lipke C.M., Liu R., Lu X., Martens E.C., Marri P.R., Medigue C., Menard M.L., Miller N.M., Morales-Soto N., Norton S., Ogier J.C., Orchard S.S., Park D., Park Y., Qurollo B.A., Sugar D.R., Richards G.R., Rouy Z., Slominski B., Slominski K., Snyder H., Tjaden B.C., van der Hoeven R., Welch R.D., Wheeler C., Xiang B., Barbazuk B., Gaudriault S., Goodner B., Slater S.C., Forst S., Goldman B.S., Goodrich-Blair H.
    PLoS ONE 6:e27909-e27909(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SS-2004Imported.

Entry informationi

Entry nameiD3V6U9_XENBS
AccessioniPrimary (citable) accession number: D3V6U9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 1, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.