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D3V1T8 (D3V1T8_XENBS) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:ydiJ EMBL CBJ81632.1
Ordered Locus Names:XBJ1_2508 EMBL CBJ81632.1
OrganismXenorhabdus bovienii (strain SS-2004) [Complete proteome] [HAMAP] EMBL CBJ81632.1
Taxonomic identifier406818 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeXenorhabdus

Protein attributes

Sequence length1023 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains FAD-binding PCMH-type domain. SAAS SAAS016167

Sequences

Sequence LengthMass (Da)Tools
D3V1T8 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 5ECEDD764887F9EB

FASTA1,023114,980
        10         20         30         40         50         60 
MIPRIPQAPH VSELAQEYLT ALKEVGFTGD TVSSYADRLT MATDNSIYQL LPQAVIFPRS 

        70         80         90        100        110        120 
SADVALLARV AGEERFYSLT FTPRGGGTGT NGQSLNNGIV VDMSRYMNRI LEINPEQGWV 

       130        140        150        160        170        180 
KVEAGVIKDQ LNQYLKPFGY FFSPELSTSN RATLGGMINT DASGQGSLVY GKTSDHVLGV 

       190        200        210        220        230        240 
RAVLLGGEMF DTRPMSTLFA ESIAQEESVI GQIYKTVLER CREQRKLIVE KFPKLNRFLT 

       250        260        270        280        290        300 
GYDLRHVYSD DMQTFDLTRI LTGSEGTLAF ITEATLDITP LPKVRRLVNA KYDSFDSALR 

       310        320        330        340        350        360 
NAPFMVEAKA LSVETVDSTV LNLAREDIIW HSVKELITDV ADKDMQGLNI VEFSGNDEQQ 

       370        380        390        400        410        420 
IDQQVYDLCQ RLDELMEENQ TGIIGYQICH HLVDIERIYA MRKKSVGLLG NSKGNAKPIP 

       430        440        450        460        470        480 
FVEDTCVPPQ HLADFITEFR QLLDSHQLNY GMFGHVDAGV LHVRPALDMC DPQQEILMKQ 

       490        500        510        520        530        540 
ISDEIVRLTA KYGGLLWGEH GKGFRAEYSP DFFGDILYDE LRRIKAAFDP LNRLNPGKIC 

       550        560        570        580        590        600 
SPIDTDAPMM KVDAAKRGTY DRTIPVNVRT AFRGAMECNG NGLCFNFDVK SPMCPSMKVS 

       610        620        630        640        650        660 
QHRIHSPKGR ATLVREWLRL LTEQGVNPKL LEQGLDQAHP SLRGLIDKTR YSWQAWRGEY 

       670        680        690        700        710        720 
DFSHEVKEAM SGCLACKACS TQCPIKIDVP SFRSSFLSLY HSRYLRPLRD HIVANVESST 

       730        740        750        760        770        780 
PLMAKVPQVF NFFLKQPWVQ KISQHTIGMV DLPLLSYPTL QQQLSGHYAA RTTLEQLETL 

       790        800        810        820        830        840 
SQSQRKQHVL IVQDPFTSYH DAKVVADFVR LTEKLGYQPV LLPFSPNGKA QHVKGFLTKF 

       850        860        870        880        890        900 
AKTAEKTASF LNRIACLNIP MVGIDPALVL CYRDEYKDIL GERRGNFSVQ LVHEWLMDIL 

       910        920        930        940        950        960 
PETPAQEKRD DSTSSYDWYL LGHCTEVTAL PNSGKQWTDI FRHFGCQLNN VSVGCCGMAG 

       970        980        990       1000       1010       1020 
TYGHEKKNID NSIGIYKLSW APALGNLGLE RCLSTGYSCR SQVKRMEGQT VKHPLQALLE 


IIP 

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References

[1]"Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SS-2004.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN667741 Genomic DNA. Translation: CBJ81632.1.
RefSeqYP_003468398.1. NC_013892.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBJ81632; CBJ81632; XBJ1_2508.
GeneID8832122.
KEGGxbo:XBJ1_2508.
PATRIC35299807. VBIXenBov95754_2258.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000243746.
KOK06911.

Enzyme and pathway databases

BioCycXBOV406818:GHLH-2495-MONOMER.

Family and domain databases

Gene3D3.30.43.10. 1 hit.
3.30.465.10. 1 hit.
InterProIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR016166. FAD-bd_2.
IPR016167. FAD-bd_2_sub1.
IPR016164. FAD-linked_Oxase-like_C.
IPR004113. FAD-linked_oxidase_C.
IPR009051. Helical_ferredxn.
IPR006094. Oxid_FAD_bind_N.
[Graphical view]
PfamPF02913. FAD-oxidase_C. 1 hit.
PF01565. FAD_binding_4. 1 hit.
PF13183. Fer4_8. 1 hit.
[Graphical view]
SUPFAMSSF46548. SSF46548. 2 hits.
SSF55103. SSF55103. 1 hit.
SSF56176. SSF56176. 2 hits.
PROSITEPS00198. 4FE4S_FER_1. 1 hit.
PS51387. FAD_PCMH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3V1T8_XENBS
AccessionPrimary (citable) accession number: D3V1T8
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 16, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)