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D3USH3 (D3USH3_LISSS) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length437 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS013452

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS013452

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site991 By similarity HAMAP-Rule MF_00455
Active site1021 By similarity HAMAP-Rule MF_00455
Metal binding2301Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2661Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2661Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2691Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2941Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3051Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3071Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3371Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
D3USH3 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 01F43D43B3CAEB1C

FASTA43749,442
        10         20         30         40         50         60 
MSYFPQVEKI QYEGKNTKNR LAFRHYNAEE VVLGKPMKEH LRFGVAYWHT MTQDGSDPFG 

        70         80         90        100        110        120 
MAINERTWIA GTEMETAKNR VEAFFEILEK LGAEYFCFHD IDVAPAGNSI EEFMNNLDEI 

       130        140        150        160        170        180 
TDLIKEKMDQ TGIKLLWNTA NMFSHPRFNN GAGSTNDPEV FAYAAAQVKK GLDISKKLNG 

       190        200        210        220        230        240 
ANYVFWGGRE GYETLLNTDM KFEQDNIARL FKMVIAYAGK IGHKPQFLIE PKPKEPSKHQ 

       250        260        270        280        290        300 
YDFDAATTMA FIQNYGLEGD FKLNLEANHA TLAGHTFEHE LRVAREFNAL GSIDANQGDM 

       310        320        330        340        350        360 
LLGWDTDEFP TNVVDVTLTM YEILQNGGIA PGGINFDAKV RRSSFAMEDL LLAHIAGMDT 

       370        380        390        400        410        420 
FARGLKAAAK IIEDKFIENI LNERYGKWSS TDIGKSILDG KEDLESLTKY AYQHGDNIKL 

       430 
ESSHIEHVKS VLNDYVF

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References

[1]"Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria."
Steinweg C., Kuenne C.T., Billion A., Mraheil M.A., Domann E., Ghai R., Barbuddhe S.B., Karst U., Goesmann A., Puhler A., Weisshaar B., Wehland J., Lampidis R., Kreft J., Goebel W., Chakraborty T., Hain T.
J. Bacteriol. 192:1473-1474(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FN557490 Genomic DNA. Translation: CBH26636.1.
RefSeqYP_003463724.1. NC_013891.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBH26636; CBH26636; lse_0485.
GeneID9082530.
KEGGlsg:lse_0485.
PATRIC32260867. VBILisSee138575_0487.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000252293.
KOK01805.

Enzyme and pathway databases

BioCycLSEE683837:GI10-501-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. Xyl_isomerase-like_TIM-brl. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3USH3_LISSS
AccessionPrimary (citable) accession number: D3USH3
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 29, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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