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D3URD8 (D3URD8_LISSS) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L1 HAMAP-Rule MF_01318
Gene names
Name:rplA HAMAP-Rule MF_01318 EMBL CBH26385.1
Ordered Locus Names:lse_0234 EMBL CBH26385.1
OrganismListeria seeligeri serovar 1/2b (strain ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954) [Complete proteome] [HAMAP] EMBL CBH26385.1
Taxonomic identifier683837 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Listeriaceae › Listeria ›

Protein attributes

Sequence length229 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP-Rule MF_01318

Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP-Rule MF_01318

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01318

Sequence similarities

Belongs to the ribosomal protein L1P family. HAMAP-Rule MF_01318

Sequences

Sequence LengthMass (Da)Tools
D3URD8 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 0BB672BB71970BC5

FASTA22924,532
        10         20         30         40         50         60 
MAKKGKKYQD ALKQIDANKV YTAEEAVELA KKIDFAKFDA TVEVAFRLGV DPKKADQQIR 

        70         80         90        100        110        120 
GAVVLPNGTG KTQRVLVFAK GEKAKEAEAA GADYVGESEF VEKINQGWFD FDVIVATPDM 

       130        140        150        160        170        180 
MGEVGKLGRV LGPKGLMPNP KTGTVTMDVT KAVNEIKAGK VEYRVDKAGN VHAAIGKVSF 

       190        200        210        220 
DAAKLVENFR TVNDVLQKAK PAAAKGTYVK NLSVTTTFGP GIQVDPASL

« Hide

References

[1]"Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria."
Steinweg C., Kuenne C.T., Billion A., Mraheil M.A., Domann E., Ghai R., Barbuddhe S.B., Karst U., Goesmann A., Puhler A., Weisshaar B., Wehland J., Lampidis R., Kreft J., Goebel W., Chakraborty T., Hain T.
J. Bacteriol. 192:1473-1474(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FN557490 Genomic DNA. Translation: CBH26385.1.
RefSeqYP_003463475.1. NC_013891.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBH26385; CBH26385; lse_0234.
GeneID9081255.
KEGGlsg:lse_0234.
PATRIC32260369. VBILisSee138575_0238.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000207015.
KOK02863.

Enzyme and pathway databases

BioCycLSEE683837:GI10-250-MONOMER.

Family and domain databases

Gene3D3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
HAMAPMF_01318_B. Ribosomal_L1_B.
InterProIPR005878. Ribosom_L1_bac-type.
IPR002143. Ribosomal_L1.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
IPR023674. Ribosomal_L1_SF.
[Graphical view]
PfamPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMSSF56808. Ribosomal_L1. 1 hit.
TIGRFAMsTIGR01169. rplA_bact. 1 hit.
PROSITEPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3URD8_LISSS
AccessionPrimary (citable) accession number: D3URD8
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 29, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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