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Protein
Submitted name:

Putative penicillin-binding protein

Gene

pbpB

Organism
Helicobacter mustelae (strain ATCC 43772 / LMG 18044 / NCTC 12198 / 12198) (Campylobacter mustelae)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciHMUS679897:GJBK-1279-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative penicillin-binding proteinImported
Gene namesi
Name:pbpBImported
Ordered Locus Names:HMU12460Imported
OrganismiHelicobacter mustelae (strain ATCC 43772 / LMG 18044 / NCTC 12198 / 12198) (Campylobacter mustelae)Imported
Taxonomic identifieri679897 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
Proteomesi
  • UP000001522 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3120HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi679897.HMU12460.

Structurei

3D structure databases

ProteinModelPortaliD3UJ25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini49 – 226178PBP_dimerInterPro annotationAdd
BLAST
Domaini269 – 573305TranspeptidaseInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105CJN. Bacteria.
COG0768. LUCA.
HOGENOMiHOG000102304.
KOiK03587.
OMAiPNKEDFF.

Family and domain databases

Gene3Di3.40.710.10. 1 hit.
InterProiIPR012338. Beta-lactam/transpept-like.
IPR005311. PBP_dimer.
IPR001460. PCN-bd_Tpept.
[Graphical view]
PfamiPF03717. PBP_dimer. 1 hit.
PF00905. Transpeptidase. 1 hit.
[Graphical view]
SUPFAMiSSF56519. SSF56519. 1 hit.
SSF56601. SSF56601. 1 hit.

Sequencei

Sequence statusi: Complete.

D3UJ25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNEQSGRIVK VFSVFVVFII IALLLCLFTL GKILGPNHIP FWQSKRIQVA
60 70 80 90 100
TRGSIYSDDN FDLASSQVLY KVSINTLSID PDKRELFINL FSIYSGMSRE
110 120 130 140 150
ELQAKLKQKG YIVFSYNIPA NVAANLRQLR SKLLAYDVFR EYQDSSGRIV
160 170 180 190 200
QKMGIDVEVS GINRNYAYND ALEPVLGYVK KREARSVTIP EGVKGLEKYY
210 220 230 240 250
NKELSPKQNG IERGDRDIRG NIIRNKTTIL RERINGSDIA LHVNLGLQRK
260 270 280 290 300
VEKMLDEFYQ QYQVDEIVAG VMDPKSGAIF ALATTNRFDP KNITSNHALN
310 320 330 340 350
ASVTERPFEP GSTIKPIVFS ILLDKNLINP LELIDLNKGF LQLGRYTIKD
360 370 380 390 400
DIYPKKNSIV QDILIRSSNV GMIKISRKLS GKEFYEGLKS FGISEASGID
410 420 430 440 450
LPYERDGVIP SIRKLSGEAY KASASYGYGL TTTFIQLLRA YGVFCNNGIL
460 470 480 490 500
VTPHLIKNIT DPDGKITTPT FPTRQAIAAP TARKIQEILI KTVQEGTGKR
510 520 530 540 550
AKIDNLIVGG KTGTARIAKS GGGYSDNIYN GSFFGFVKGG NQTYVIGVVV
560 570 580
FGTQHKEDYY GSQTAAPIFK EIARIMQKQN FFKEQK
Length:586
Mass (Da):65,523
Last modified:April 20, 2010 - v1
Checksum:i2096E79859BB7D80
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN555004 Genomic DNA. Translation: CBG40500.1.
RefSeqiWP_013023568.1. NC_013949.1.

Genome annotation databases

EnsemblBacteriaiCBG40500; CBG40500; HMU12460.
KEGGihms:HMU12460.
PATRICi35380220. VBIHelMus149082_1499.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN555004 Genomic DNA. Translation: CBG40500.1.
RefSeqiWP_013023568.1. NC_013949.1.

3D structure databases

ProteinModelPortaliD3UJ25.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi679897.HMU12460.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBG40500; CBG40500; HMU12460.
KEGGihms:HMU12460.
PATRICi35380220. VBIHelMus149082_1499.

Phylogenomic databases

eggNOGiENOG4105CJN. Bacteria.
COG0768. LUCA.
HOGENOMiHOG000102304.
KOiK03587.
OMAiPNKEDFF.

Enzyme and pathway databases

BioCyciHMUS679897:GJBK-1279-MONOMER.

Family and domain databases

Gene3Di3.40.710.10. 1 hit.
InterProiIPR012338. Beta-lactam/transpept-like.
IPR005311. PBP_dimer.
IPR001460. PCN-bd_Tpept.
[Graphical view]
PfamiPF03717. PBP_dimer. 1 hit.
PF00905. Transpeptidase. 1 hit.
[Graphical view]
SUPFAMiSSF56519. SSF56519. 1 hit.
SSF56601. SSF56601. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen."
    O'Toole P.W., Snelling W.J., Canchaya C., Forde B.M., Hardie K.R., Josenhans C., Graham R.L.J., McMullan G., Parkhill J., Belda E., Bentley S.D.
    BMC Genomics 11:164-164(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43772 / LMG 18044 / NCTC 12198 / 12198Imported.

Entry informationi

Entry nameiD3UJ25_HELM1
AccessioniPrimary (citable) accession number: D3UJ25
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 16, 2016
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.