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D3UJ25 (D3UJ25_HELM1) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length586 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionpenicillin binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3UJ25 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 2096E79859BB7D80

FASTA58665,523
        10         20         30         40         50         60 
MNEQSGRIVK VFSVFVVFII IALLLCLFTL GKILGPNHIP FWQSKRIQVA TRGSIYSDDN 

        70         80         90        100        110        120 
FDLASSQVLY KVSINTLSID PDKRELFINL FSIYSGMSRE ELQAKLKQKG YIVFSYNIPA 

       130        140        150        160        170        180 
NVAANLRQLR SKLLAYDVFR EYQDSSGRIV QKMGIDVEVS GINRNYAYND ALEPVLGYVK 

       190        200        210        220        230        240 
KREARSVTIP EGVKGLEKYY NKELSPKQNG IERGDRDIRG NIIRNKTTIL RERINGSDIA 

       250        260        270        280        290        300 
LHVNLGLQRK VEKMLDEFYQ QYQVDEIVAG VMDPKSGAIF ALATTNRFDP KNITSNHALN 

       310        320        330        340        350        360 
ASVTERPFEP GSTIKPIVFS ILLDKNLINP LELIDLNKGF LQLGRYTIKD DIYPKKNSIV 

       370        380        390        400        410        420 
QDILIRSSNV GMIKISRKLS GKEFYEGLKS FGISEASGID LPYERDGVIP SIRKLSGEAY 

       430        440        450        460        470        480 
KASASYGYGL TTTFIQLLRA YGVFCNNGIL VTPHLIKNIT DPDGKITTPT FPTRQAIAAP 

       490        500        510        520        530        540 
TARKIQEILI KTVQEGTGKR AKIDNLIVGG KTGTARIAKS GGGYSDNIYN GSFFGFVKGG 

       550        560        570        580 
NQTYVIGVVV FGTQHKEDYY GSQTAAPIFK EIARIMQKQN FFKEQK 

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References

[1]"Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen."
O'Toole P.W., Snelling W.J., Canchaya C., Forde B.M., Hardie K.R., Josenhans C., Graham R.L.J., McMullan G., Parkhill J., Belda E., Bentley S.D.
BMC Genomics 11:164-164(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43772 / LMG 18044 / NCTC 12198 / 12198.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN555004 Genomic DNA. Translation: CBG40500.1.
RefSeqYP_003517224.1. NC_013949.1.

3D structure databases

ProteinModelPortalD3UJ25.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBG40500; CBG40500; HMU12460.
GeneID8865996.
KEGGhms:HMU12460.
PATRIC35380220. VBIHelMus149082_1499.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000102304.
KOK03587.
OMADACLSPV.

Enzyme and pathway databases

BioCycHMUS679897:GJBK-1279-MONOMER.

Family and domain databases

Gene3D3.40.710.10. 1 hit.
InterProIPR012338. Beta-lactam/transpept-like.
IPR005311. PBP_dimer.
IPR001460. PCN-bd_Tpept.
[Graphical view]
PfamPF03717. PBP_dimer. 1 hit.
PF00905. Transpeptidase. 1 hit.
[Graphical view]
SUPFAMSSF56519. SSF56519. 1 hit.
SSF56601. SSF56601. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3UJ25_HELM1
AccessionPrimary (citable) accession number: D3UJ25
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 13, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)