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D3UGP7 (D3UGP7_HELM1) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region129 – 1368Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3451Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5481Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1421Substrate By similarity PIRSR PIRSR009407-2
Binding site5471Substrate By similarity PIRSR PIRSR009407-2
Site2521Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4151Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
D3UGP7 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: DAF8E1C16F4A3276

FASTA74282,856
        10         20         30         40         50         60 
MKITYTLTDE SPALATYSFL PIVRAFLHTA GIEVESADIS LAGRILAQFP QHLTPSQRIP 

        70         80         90        100        110        120 
NALEALGELV KHKDANLIKT PNISASIPQL KNAIAELQAK GYNVPNYPDN PKNQEEEEIK 

       130        140        150        160        170        180 
ENYQKILGSA VNPVLRQGNS DRRSTKAVKQ YAKKNPYKIA PFDSNSKTIV SYMQEGDFFS 

       190        200        210        220        230        240 
NEKAVWIKEP TEARIVFENK EGKREILKKG LKLEKEEILD ATFMDVEALD RFYVDQIALC 

       250        260        270        280        290        300 
KKQDILFSLH LKATMMKVSD PVIFGHAVRT FFAELFEEFA DELHALGVNP NNGISELLQK 

       310        320        330        340        350        360 
IQTSAKKDAI LQKYEEILHK SAKISMVNSD KGITNLHVPS DVIVDASMPA MLKNGAKLWD 

       370        380        390        400        410        420 
KEGRECDTNA VIPDRTYATI YEAVIEDLHK FGPLDPSKLG SVANVGLMAK KAQEYGSHDK 

       430        440        450        460        470        480 
TFIAKEAGSF KILDHQDRVL LEHAVQKGDI YRANQAKHDA IINWIDLGIQ RSETSHTPAI 

       490        500        510        520        530        540 
FWLDEKRPSN KIMIEMVQKR LQERGIALKS SHGANLEILP PKAACLKSLE IIRNGGDVIS 

       550        560        570        580        590        600 
ITGNVLRDYL TDLFPILELG TSAKMLSIVP MLSGGAMFET GAGGSAPKQV EQLLLENHLR 

       610        620        630        640        650        660 
WDSLGEFLAL QASLEFFAQQ NHNARAKVLA DALDVAIGKW LDNNKAPSRN AGQDDNRTSH 

       670        680        690        700        710        720 
FYLAMYFAEA LAKQKEDTAL QERFAPIASE LQAKEQKIKE EFLSKEGVSV DLGGYYKFDD 

       730        740 
EKAIKIMRPS ATFNEILHKI AQ

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References

[1]"Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen."
O'Toole P.W., Snelling W.J., Canchaya C., Forde B.M., Hardie K.R., Josenhans C., Graham R.L.J., McMullan G., Parkhill J., Belda E., Bentley S.D.
BMC Genomics 11:164-164(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43772 / LMG 18044 / NCTC 12198 / 12198.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FN555004 Genomic DNA. Translation: CBG39668.1.
RefSeqYP_003516410.1. NC_013949.1.

3D structure databases

ProteinModelPortalD3UGP7.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBG39668; CBG39668; HMU04060.
GeneID8866251.
KEGGhms:HMU04060.
PATRIC35378142. VBIHelMus149082_0479.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000240860.
KOK00031.
OMAPRTMGTV.

Enzyme and pathway databases

BioCycHMUS679897:GJBK-426-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3UGP7_HELM1
AccessionPrimary (citable) accession number: D3UGP7
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 1, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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