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D3T4F8

- D3T4F8_THEIA

UniProt

D3T4F8 - D3T4F8_THEIA

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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene
Thit_1868
Organism
Thermoanaerobacter italicus (strain DSM 9252 / Ab9)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTITA580331:GHTM-1924-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Thit_1868Imported
OrganismiThermoanaerobacter italicus (strain DSM 9252 / Ab9)Imported
Taxonomic identifieri580331 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeThermoanaerobacter
ProteomesiUP000001552: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiGKPSFHE.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3T4F8-1 [UniParc]FASTAAdd to Basket

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MTMIEEKISP MLAFSSDPFD NPEWIYEIKW DGSRTIAFLS NKTRLQDRRL    50
VDITHQFPDL ALLHKQIKAK EAILDGELVV LKNGKPSYKS IMSRKHQQNL 100
VKINLLSKIM PVIFITWDIL YLNGKSLVEL PLIERKDILR KTVKESEVIK 150
ISDFIFEHGK RLFEETGKRG LEGIVAKKVD SKYLIGKRSK LWLKSKHFIV 200
INAVIIGYRT DKTALILGLY DEENNLINIG SCESGLSQKE LKAFYEVAKE 250
IKAPDNYYNF KEKNVQWLKP LLTCKVRFME WSENMKMRAP SFIQFEYNVK 300
PEECRFE 307
Length:307
Mass (Da):35,913
Last modified:April 20, 2010 - v1
Checksum:i420BA1920D3A5FD4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001936 Genomic DNA. Translation: ADD03110.1.
RefSeqiYP_003477672.1. NC_013921.1.

Genome annotation databases

EnsemblBacteriaiADD03110; ADD03110; Thit_1868.
GeneIDi8822216.
KEGGitit:Thit_1868.
PATRICi32498828. VBITheIta22270_1913.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001936 Genomic DNA. Translation: ADD03110.1 .
RefSeqi YP_003477672.1. NC_013921.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADD03110 ; ADD03110 ; Thit_1868 .
GeneIDi 8822216.
KEGGi tit:Thit_1868.
PATRICi 32498828. VBITheIta22270_1913.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi GKPSFHE.

Enzyme and pathway databases

BioCyci TITA580331:GHTM-1924-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Thermoanaerobacter italicus Ab9."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Hemme C.L., Woyke T.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 9252 / Ab9.

Entry informationi

Entry nameiD3T4F8_THEIA
AccessioniPrimary (citable) accession number: D3T4F8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 14, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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