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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Thit_1868

Organism
Thermoanaerobacter italicus (strain DSM 9252 / Ab9)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTITA580331:GHTM-1924-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Thit_1868Imported
OrganismiThermoanaerobacter italicus (strain DSM 9252 / Ab9)Imported
Taxonomic identifieri580331 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeThermoanaerobacter
ProteomesiUP000001552 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi580331.Thit_1868.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiWTHRFPT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3T4F8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTMIEEKISP MLAFSSDPFD NPEWIYEIKW DGSRTIAFLS NKTRLQDRRL
60 70 80 90 100
VDITHQFPDL ALLHKQIKAK EAILDGELVV LKNGKPSYKS IMSRKHQQNL
110 120 130 140 150
VKINLLSKIM PVIFITWDIL YLNGKSLVEL PLIERKDILR KTVKESEVIK
160 170 180 190 200
ISDFIFEHGK RLFEETGKRG LEGIVAKKVD SKYLIGKRSK LWLKSKHFIV
210 220 230 240 250
INAVIIGYRT DKTALILGLY DEENNLINIG SCESGLSQKE LKAFYEVAKE
260 270 280 290 300
IKAPDNYYNF KEKNVQWLKP LLTCKVRFME WSENMKMRAP SFIQFEYNVK

PEECRFE
Length:307
Mass (Da):35,913
Last modified:April 20, 2010 - v1
Checksum:i420BA1920D3A5FD4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001936 Genomic DNA. Translation: ADD03110.1.
RefSeqiWP_012995821.1. NC_013921.1.

Genome annotation databases

EnsemblBacteriaiADD03110; ADD03110; Thit_1868.
KEGGitit:Thit_1868.
PATRICi32498828. VBITheIta22270_1913.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001936 Genomic DNA. Translation: ADD03110.1.
RefSeqiWP_012995821.1. NC_013921.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi580331.Thit_1868.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADD03110; ADD03110; Thit_1868.
KEGGitit:Thit_1868.
PATRICi32498828. VBITheIta22270_1913.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiWTHRFPT.

Enzyme and pathway databases

BioCyciTITA580331:GHTM-1924-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Thermoanaerobacter italicus Ab9."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Hemme C.L., Woyke T.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 9252 / Ab9Imported.

Entry informationi

Entry nameiD3T4F8_THEIA
AccessioniPrimary (citable) accession number: D3T4F8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 22, 2015
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.