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D3T4F8

- D3T4F8_THEIA

UniProt

D3T4F8 - D3T4F8_THEIA

Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Thit_1868

Organism
Thermoanaerobacter italicus (strain DSM 9252 / Ab9)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTITA580331:GHTM-1924-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, ligase domain proteinImported
    Gene namesi
    Ordered Locus Names:Thit_1868Imported
    OrganismiThermoanaerobacter italicus (strain DSM 9252 / Ab9)Imported
    Taxonomic identifieri580331 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeThermoanaerobacter
    ProteomesiUP000001552: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiGKPSFHE.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3T4F8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTMIEEKISP MLAFSSDPFD NPEWIYEIKW DGSRTIAFLS NKTRLQDRRL    50
    VDITHQFPDL ALLHKQIKAK EAILDGELVV LKNGKPSYKS IMSRKHQQNL 100
    VKINLLSKIM PVIFITWDIL YLNGKSLVEL PLIERKDILR KTVKESEVIK 150
    ISDFIFEHGK RLFEETGKRG LEGIVAKKVD SKYLIGKRSK LWLKSKHFIV 200
    INAVIIGYRT DKTALILGLY DEENNLINIG SCESGLSQKE LKAFYEVAKE 250
    IKAPDNYYNF KEKNVQWLKP LLTCKVRFME WSENMKMRAP SFIQFEYNVK 300
    PEECRFE 307
    Length:307
    Mass (Da):35,913
    Last modified:April 20, 2010 - v1
    Checksum:i420BA1920D3A5FD4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001936 Genomic DNA. Translation: ADD03110.1.
    RefSeqiYP_003477672.1. NC_013921.1.

    Genome annotation databases

    EnsemblBacteriaiADD03110; ADD03110; Thit_1868.
    GeneIDi8822216.
    KEGGitit:Thit_1868.
    PATRICi32498828. VBITheIta22270_1913.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001936 Genomic DNA. Translation: ADD03110.1 .
    RefSeqi YP_003477672.1. NC_013921.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADD03110 ; ADD03110 ; Thit_1868 .
    GeneIDi 8822216.
    KEGGi tit:Thit_1868.
    PATRICi 32498828. VBITheIta22270_1913.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi GKPSFHE.

    Enzyme and pathway databases

    BioCyci TITA580331:GHTM-1924-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Thermoanaerobacter italicus Ab9."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., Hemme C.L., Woyke T.
      Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 9252 / Ab9Imported.

    Entry informationi

    Entry nameiD3T4F8_THEIA
    AccessioniPrimary (citable) accession number: D3T4F8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3