Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D3SZI3 (D3SZI3_NATMM) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=4.1.1.39 EMBL ELY26719.1

Ribulose bisphosphate carboxylase, type III EMBL ADD04317.1
EC=4.1.1.39 EMBL ADD04317.1
Gene names
Name:rbcL EMBL ELY26719.1
Ordered Locus Names:Nmag_0732 EMBL ADD04317.1
ORF Names:C500_16200 EMBL ELY26719.1
OrganismNatrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii) [Complete proteome] [HAMAP] EMBL ADD04317.1
Taxonomic identifier547559 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatrialba

Protein attributes

Sequence length418 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ADD04317.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3SZI3 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: C582979A06488EA7

FASTA41844,905
        10         20         30         40         50         60 
MTGIEYDDFL DREYNPDSTD LVCTFRIDPA EDMSMEAAAS RVASESSNGT WAALHVDEDE 

        70         80         90        100        110        120 
LTHLGAVAYG IDGDEITVAY PAELFEAGSM PQILSCIAGN IMGMKAVDAI RLEDCKWPES 

       130        140        150        160        170        180 
ITSGFPGPQF GTSVAREKLD AGDRPILATV PKPKVGLSTD AHVRVGEEAW RGGVDLLKDD 

       190        200        210        220        230        240 
ENLTDQDFNP FEDRLAESLA ARDRVEEDVG ERKDYLVNVT AETNEMLERV DLVDEHGGGF 

       250        260        270        280        290        300 
VMVDIITCGW SAVQSVRDRC EKHGLAIHAH RAMHAAFDRM DHHGVSMRVI AQISRLCGVD 

       310        320        330        340        350        360 
HIHTGTAGLG KLANEDTPGI NDWLHGNCHG LNPVLPVASG GLHPGVVDQL IDALGTDICV 

       370        380        390        400        410 
QAGGGIHGHP DGTHAGAKAL RQATDASLDG VPLEEYAQDP AHAELATALK KWGAETPR 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of chromosome of Natrialba magadii ATCC 43099."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Saunders E., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., De Castro R.E., Maupin-Furlow J.A., Woyke T.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3.
[2]"A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T."
Siddaramappa S., Challacombe J.F., Decastro R.E., Pfeiffer F., Sastre D.E., Gimenez M.I., Paggi R.A., Detter J.C., Davenport K.W., Goodwin L.A., Kyrpides N., Tapia R., Pitluck S., Lucas S., Woyke T., Maupin-Furlow J.A.
BMC Genomics 13:165-165(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 43099 EMBL ADD04317.1.
[3]Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MS-3 EMBL ELY26719.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001932 Genomic DNA. Translation: ADD04317.1.
AOHS01000051 Genomic DNA. Translation: ELY26719.1.
RefSeqYP_003478879.1. NC_013922.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADD04317; ADD04317; Nmag_0732.
ELY26719; ELY26719; C500_16200.
GeneID8823560.
KEGGnmg:Nmag_0732.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000230831.
KOK01601.
OMAHRAMHAA.

Enzyme and pathway databases

BioCycNMAG547559:GJAP-746-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR017712. RuBisCO_III.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
TIGRFAMsTIGR03326. rubisco_III. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3SZI3_NATMM
AccessionPrimary (citable) accession number: D3SZI3
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 19, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)