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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Nmag_1102

Organism
Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNMAG547559:GJAP-1119-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Nmag_1102Imported
ORF Names:C500_18031Imported
OrganismiNatrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii)Imported
Taxonomic identifieri547559 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatrialba
ProteomesiUP000001879: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000224394.
KOiK07468.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

D3SRI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGTPDDGTEA DTGTETESET DMGTETETET DTGTETETET DPEANANHTT
60 70 80 90 100
DSDDVDVDYH RLLGIGDAAF ASLEPHLQQR NYEGLEYRHV PDYRRGVERG
110 120 130 140 150
TVLIDGEVVR GFPKVPRTLV LETGIPTQFD EHEQVAVEEK LNGYNVRVAR
160 170 180 190 200
IHGEQLAFSR SGMVCPFTTR LLRRLVDLAA LFEEYPKAMV CGEIIGPENP
210 220 230 240 250
YTAHEYPDVD SIAFRAFDWR DRESGKPLPI RERRERYEAF GVPQTPLFEI
260 270 280 290 300
VDVDDAAASV QELIHELDAE DREGVILQSL DGDTLLKYTT SASTNSDLAY
310 320 330 340 350
AFSLPFDYGQ AFMFRRLLRE GYQTVEWDED DEAARERAHE LGESILCSMR
360 370 380 390 400
EAIQSVEDGD TLGERHTVRA SDETIDVLFE HLRGQGLTID IEDDFHEDGD
410 420
RVVTFCKRTP SSNDTIRNYL DGHIVRE
Length:427
Mass (Da):48,226
Last modified:April 20, 2010 - v1
Checksum:iD789CE9AD3ADF5FB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001932 Genomic DNA. Translation: ADD04686.1.
AOHS01000056 Genomic DNA. Translation: ELY25342.1.
RefSeqiYP_003479248.1. NC_013922.1.

Genome annotation databases

EnsemblBacteriaiADD04686; ADD04686; Nmag_1102.
ELY25342; ELY25342; C500_18031.
GeneIDi8823933.
KEGGinmg:Nmag_1102.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001932 Genomic DNA. Translation: ADD04686.1.
AOHS01000056 Genomic DNA. Translation: ELY25342.1.
RefSeqiYP_003479248.1. NC_013922.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADD04686; ADD04686; Nmag_1102.
ELY25342; ELY25342; C500_18031.
GeneIDi8823933.
KEGGinmg:Nmag_1102.

Phylogenomic databases

HOGENOMiHOG000224394.
KOiK07468.

Enzyme and pathway databases

BioCyciNMAG547559:GJAP-1119-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of chromosome of Natrialba magadii ATCC 43099."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Saunders E., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., De Castro R.E., Maupin-Furlow J.A., Woyke T.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3Imported.
  2. "A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T."
    Siddaramappa S., Challacombe J.F., Decastro R.E., Pfeiffer F., Sastre D.E., Gimenez M.I., Paggi R.A., Detter J.C., Davenport K.W., Goodwin L.A., Kyrpides N., Tapia R., Pitluck S., Lucas S., Woyke T., Maupin-Furlow J.A.
    BMC Genomics 13:165-165(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 43099Imported.
  3. Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
    Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MS-3Imported.

Entry informationi

Entry nameiD3SRI1_NATMM
AccessioniPrimary (citable) accession number: D3SRI1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 4, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.