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D3SRI1 (D3SRI1_NATMM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Nmag_1102 EMBL ADD04686.1
ORF Names:C500_18031 EMBL ELY25342.1
OrganismNatrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii) [Complete proteome] [HAMAP] EMBL ADD04686.1
Taxonomic identifier547559 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatrialba

Protein attributes

Sequence length427 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADD04686.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3SRI1 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: D789CE9AD3ADF5FB

FASTA42748,226
        10         20         30         40         50         60 
MGTPDDGTEA DTGTETESET DMGTETETET DTGTETETET DPEANANHTT DSDDVDVDYH 

        70         80         90        100        110        120 
RLLGIGDAAF ASLEPHLQQR NYEGLEYRHV PDYRRGVERG TVLIDGEVVR GFPKVPRTLV 

       130        140        150        160        170        180 
LETGIPTQFD EHEQVAVEEK LNGYNVRVAR IHGEQLAFSR SGMVCPFTTR LLRRLVDLAA 

       190        200        210        220        230        240 
LFEEYPKAMV CGEIIGPENP YTAHEYPDVD SIAFRAFDWR DRESGKPLPI RERRERYEAF 

       250        260        270        280        290        300 
GVPQTPLFEI VDVDDAAASV QELIHELDAE DREGVILQSL DGDTLLKYTT SASTNSDLAY 

       310        320        330        340        350        360 
AFSLPFDYGQ AFMFRRLLRE GYQTVEWDED DEAARERAHE LGESILCSMR EAIQSVEDGD 

       370        380        390        400        410        420 
TLGERHTVRA SDETIDVLFE HLRGQGLTID IEDDFHEDGD RVVTFCKRTP SSNDTIRNYL 


DGHIVRE 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of chromosome of Natrialba magadii ATCC 43099."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Saunders E., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., De Castro R.E., Maupin-Furlow J.A., Woyke T.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3.
[2]"A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T."
Siddaramappa S., Challacombe J.F., Decastro R.E., Pfeiffer F., Sastre D.E., Gimenez M.I., Paggi R.A., Detter J.C., Davenport K.W., Goodwin L.A., Kyrpides N., Tapia R., Pitluck S., Lucas S., Woyke T., Maupin-Furlow J.A.
BMC Genomics 13:165-165(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 43099 EMBL ADD04686.1.
[3]Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MS-3 EMBL ELY25342.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001932 Genomic DNA. Translation: ADD04686.1.
AOHS01000056 Genomic DNA. Translation: ELY25342.1.
RefSeqYP_003479248.1. NC_013922.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADD04686; ADD04686; Nmag_1102.
ELY25342; ELY25342; C500_18031.
GeneID8823933.
KEGGnmg:Nmag_1102.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000224394.
KOK07468.

Enzyme and pathway databases

BioCycNMAG547559:GJAP-1119-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSPR01048. Y414FAMILY.
TIGRFAMsTIGR01209. TIGR01209. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3SRI1_NATMM
AccessionPrimary (citable) accession number: D3SRI1
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 16, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)