D3SRI1 (D3SRI1_NATMM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADD04686.1

Gene names

Ordered Locus Names:	Nmag_1102 EMBL ADD04686.1
ORF Names:	C500_18031 EMBL ELY25342.1

Organism

Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii) [Complete proteome] [HAMAP] EMBL ADD04686.1

Taxonomic identifier

547559 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Halobacteria › Halobacteriales › Halobacteriaceae › Natrialba › Natrialba magadii

Protein attributes

Sequence length	427 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADD04686.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3SRI1 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: D789CE9AD3ADF5FB	FASTA	427	48,226
	10 20 30 40 50 60 MGTPDDGTEA DTGTETESET DMGTETETET DTGTETETET DPEANANHTT DSDDVDVDYH 70 80 90 100 110 120 RLLGIGDAAF ASLEPHLQQR NYEGLEYRHV PDYRRGVERG TVLIDGEVVR GFPKVPRTLV 130 140 150 160 170 180 LETGIPTQFD EHEQVAVEEK LNGYNVRVAR IHGEQLAFSR SGMVCPFTTR LLRRLVDLAA 190 200 210 220 230 240 LFEEYPKAMV CGEIIGPENP YTAHEYPDVD SIAFRAFDWR DRESGKPLPI RERRERYEAF 250 260 270 280 290 300 GVPQTPLFEI VDVDDAAASV QELIHELDAE DREGVILQSL DGDTLLKYTT SASTNSDLAY 310 320 330 340 350 360 AFSLPFDYGQ AFMFRRLLRE GYQTVEWDED DEAARERAHE LGESILCSMR EAIQSVEDGD 370 380 390 400 410 420 TLGERHTVRA SDETIDVLFE HLRGQGLTID IEDDFHEDGD RVVTFCKRTP SSNDTIRNYL DGHIVRE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of chromosome of Natrialba magadii ATCC 43099." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Saunders E., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., De Castro R.E., Maupin-Furlow J.A., Woyke T. Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3.
[2]	"A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T." Siddaramappa S., Challacombe J.F., Decastro R.E., Pfeiffer F., Sastre D.E., Gimenez M.I., Paggi R.A., Detter J.C., Davenport K.W., Goodwin L.A., Kyrpides N., Tapia R., Pitluck S., Lucas S., Woyke T., Maupin-Furlow J.A. BMC Genomics 13:165-165(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 43099 EMBL ADD04686.1.
[3]	Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T. Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: MS-3 EMBL ELY25342.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001932 Genomic DNA. Translation: ADD04686.1. AOHS01000056 Genomic DNA. Translation: ELY25342.1.
RefSeq	YP_003479248.1. NC_013922.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADD04686; ADD04686; Nmag_1102.
GeneID	8823933.
KEGG	nmg:Nmag_1102.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000224394.
KO	K07468.
Enzyme and pathway databases
BioCyc	NMAG547559:GJAP-1119-MONOMER.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR001072. Uncharacterised_MJ0414. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
PRINTS	PR01048. Y414FAMILY.
TIGRFAMs	TIGR01209. TIGR01209. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D3SRI1_NATMM

Accession

Primary (citable) accession number: D3SRI1

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 1, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)