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D3SRI1

- D3SRI1_NATMM

UniProt

D3SRI1 - D3SRI1_NATMM

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Nmag_1102

Organism
Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciNMAG547559:GJAP-1119-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Nmag_1102Imported
    ORF Names:C500_18031Imported
    OrganismiNatrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii)Imported
    Taxonomic identifieri547559 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatrialba
    ProteomesiUP000001879: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000224394.
    KOiK07468.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR001072. Uncharacterised_MJ0414.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    PRINTSiPR01048. Y414FAMILY.
    TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D3SRI1-1 [UniParc]FASTAAdd to Basket

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    MGTPDDGTEA DTGTETESET DMGTETETET DTGTETETET DPEANANHTT    50
    DSDDVDVDYH RLLGIGDAAF ASLEPHLQQR NYEGLEYRHV PDYRRGVERG 100
    TVLIDGEVVR GFPKVPRTLV LETGIPTQFD EHEQVAVEEK LNGYNVRVAR 150
    IHGEQLAFSR SGMVCPFTTR LLRRLVDLAA LFEEYPKAMV CGEIIGPENP 200
    YTAHEYPDVD SIAFRAFDWR DRESGKPLPI RERRERYEAF GVPQTPLFEI 250
    VDVDDAAASV QELIHELDAE DREGVILQSL DGDTLLKYTT SASTNSDLAY 300
    AFSLPFDYGQ AFMFRRLLRE GYQTVEWDED DEAARERAHE LGESILCSMR 350
    EAIQSVEDGD TLGERHTVRA SDETIDVLFE HLRGQGLTID IEDDFHEDGD 400
    RVVTFCKRTP SSNDTIRNYL DGHIVRE 427
    Length:427
    Mass (Da):48,226
    Last modified:April 20, 2010 - v1
    Checksum:iD789CE9AD3ADF5FB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001932 Genomic DNA. Translation: ADD04686.1.
    AOHS01000056 Genomic DNA. Translation: ELY25342.1.
    RefSeqiYP_003479248.1. NC_013922.1.

    Genome annotation databases

    EnsemblBacteriaiADD04686; ADD04686; Nmag_1102.
    ELY25342; ELY25342; C500_18031.
    GeneIDi8823933.
    KEGGinmg:Nmag_1102.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001932 Genomic DNA. Translation: ADD04686.1 .
    AOHS01000056 Genomic DNA. Translation: ELY25342.1 .
    RefSeqi YP_003479248.1. NC_013922.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADD04686 ; ADD04686 ; Nmag_1102 .
    ELY25342 ; ELY25342 ; C500_18031 .
    GeneIDi 8823933.
    KEGGi nmg:Nmag_1102.

    Phylogenomic databases

    HOGENOMi HOG000224394.
    KOi K07468.

    Enzyme and pathway databases

    BioCyci NMAG547559:GJAP-1119-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR001072. Uncharacterised_MJ0414.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    PRINTSi PR01048. Y414FAMILY.
    TIGRFAMsi TIGR01209. TIGR01209. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Natrialba magadii ATCC 43099."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Saunders E., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., De Castro R.E., Maupin-Furlow J.A., Woyke T.
      Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3Imported.
    2. "A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T."
      Siddaramappa S., Challacombe J.F., Decastro R.E., Pfeiffer F., Sastre D.E., Gimenez M.I., Paggi R.A., Detter J.C., Davenport K.W., Goodwin L.A., Kyrpides N., Tapia R., Pitluck S., Lucas S., Woyke T., Maupin-Furlow J.A.
      BMC Genomics 13:165-165(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: ATCC 43099Imported.
    3. Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
      Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MS-3Imported.

    Entry informationi

    Entry nameiD3SRI1_NATMM
    AccessioniPrimary (citable) accession number: D3SRI1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3