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D3SRI1

- D3SRI1_NATMM

UniProt

D3SRI1 - D3SRI1_NATMM

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Nmag_1102, C500_18031
Organism
Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNMAG547559:GJAP-1119-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Nmag_1102Imported
ORF Names:C500_18031Imported
OrganismiNatrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) (Natronobacterium magadii)Imported
Taxonomic identifieri547559 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatrialba
ProteomesiUP000001879: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000224394.
KOiK07468.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

D3SRI1-1 [UniParc]FASTAAdd to Basket

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MGTPDDGTEA DTGTETESET DMGTETETET DTGTETETET DPEANANHTT    50
DSDDVDVDYH RLLGIGDAAF ASLEPHLQQR NYEGLEYRHV PDYRRGVERG 100
TVLIDGEVVR GFPKVPRTLV LETGIPTQFD EHEQVAVEEK LNGYNVRVAR 150
IHGEQLAFSR SGMVCPFTTR LLRRLVDLAA LFEEYPKAMV CGEIIGPENP 200
YTAHEYPDVD SIAFRAFDWR DRESGKPLPI RERRERYEAF GVPQTPLFEI 250
VDVDDAAASV QELIHELDAE DREGVILQSL DGDTLLKYTT SASTNSDLAY 300
AFSLPFDYGQ AFMFRRLLRE GYQTVEWDED DEAARERAHE LGESILCSMR 350
EAIQSVEDGD TLGERHTVRA SDETIDVLFE HLRGQGLTID IEDDFHEDGD 400
RVVTFCKRTP SSNDTIRNYL DGHIVRE 427
Length:427
Mass (Da):48,226
Last modified:April 20, 2010 - v1
Checksum:iD789CE9AD3ADF5FB
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001932 Genomic DNA. Translation: ADD04686.1.
AOHS01000056 Genomic DNA. Translation: ELY25342.1.
RefSeqiYP_003479248.1. NC_013922.1.

Genome annotation databases

EnsemblBacteriaiADD04686; ADD04686; Nmag_1102.
ELY25342; ELY25342; C500_18031.
GeneIDi8823933.
KEGGinmg:Nmag_1102.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001932 Genomic DNA. Translation: ADD04686.1 .
AOHS01000056 Genomic DNA. Translation: ELY25342.1 .
RefSeqi YP_003479248.1. NC_013922.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADD04686 ; ADD04686 ; Nmag_1102 .
ELY25342 ; ELY25342 ; C500_18031 .
GeneIDi 8823933.
KEGGi nmg:Nmag_1102.

Phylogenomic databases

HOGENOMi HOG000224394.
KOi K07468.

Enzyme and pathway databases

BioCyci NMAG547559:GJAP-1119-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
PRINTSi PR01048. Y414FAMILY.
TIGRFAMsi TIGR01209. TIGR01209. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of chromosome of Natrialba magadii ATCC 43099."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Saunders E., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Mikhailova N., De Castro R.E., Maupin-Furlow J.A., Woyke T.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3.
  2. "A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T."
    Siddaramappa S., Challacombe J.F., Decastro R.E., Pfeiffer F., Sastre D.E., Gimenez M.I., Paggi R.A., Detter J.C., Davenport K.W., Goodwin L.A., Kyrpides N., Tapia R., Pitluck S., Lucas S., Woyke T., Maupin-Furlow J.A.
    BMC Genomics 13:165-165(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 43099Imported.
  3. Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
    Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MS-3Imported.

Entry informationi

Entry nameiD3SRI1_NATMM
AccessioniPrimary (citable) accession number: D3SRI1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 16, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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