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Protein
Submitted name:

Ribulose-bisphosphate carboxylase

Gene

TK90_0858

Organism
Thioalkalivibrio sp. (strain K90mix)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciTSP396595:GH8D-884-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-bisphosphate carboxylaseImported (EC:4.1.1.39Imported)
Gene namesi
Ordered Locus Names:TK90_0858Imported
OrganismiThioalkalivibrio sp. (strain K90mix)Imported
Taxonomic identifieri396595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesEctothiorhodospiraceaeThioalkalivibrio
Proteomesi
  • UP000009099 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi396595.TK90_0858.

Structurei

3D structure databases

ProteinModelPortaliD3SFZ3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini17 – 137121RuBisCO_large_NInterPro annotationAdd
BLAST
Domaini147 – 455309RuBisCO_largeInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3SFZ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAKKYSAGV KDYRETYWMP EYMPLDTDLL ACFKITPQPG IDREEAAAAV
60 70 80 90 100
AAESSTGTWT TVWTDLLTDM DYYKGRAYSI EDVPGDDESF YAFIAYPIDL
110 120 130 140 150
FEEGSMVNVF TSLVGNVFGF KAIRALRLED VRFPMAYVKT CGGPPSGIQV
160 170 180 190 200
ERDKLNKYGR PMLGCTIKPK LGLSAKNYGR AVYECLRGGL DFTKDDENIN
210 220 230 240 250
SQPFMRWRDR FEFVQEATEK AEAETGERKG HYLNVTAPTP EEMYKRAEFA
260 270 280 290 300
KEIGAPIIMH DYITGGFCAN TGLANWCRDN GVLLHIHRAM HAVLDRHPKH
310 320 330 340 350
GIHFRVLAKI LRLSGGDHLH TGTVVGKLEG DRAATLGWID LLRESFIPED
360 370 380 390 400
RSRGIFFDQD WGSMPGVFAV ASGGIHVWHM PALVSIFGDD SVLQFGGGTL
410 420 430 440 450
GHPWGNAPGA AANRVALEAC VQARNEGRDI EKEGKDILTQ AAQHSPELKI
460 470
AMETWKEIKF EFDTVDKLDT QHK
Length:473
Mass (Da):52,788
Last modified:April 20, 2010 - v1
Checksum:i7773541EE3964C71
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001905 Genomic DNA. Translation: ADC71373.1.
RefSeqiWP_012982269.1. NC_013889.1.

Genome annotation databases

EnsemblBacteriaiADC71373; ADC71373; TK90_0858.
KEGGitkm:TK90_0858.
PATRICi32525280. VBIThiSp13812_0854.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001905 Genomic DNA. Translation: ADC71373.1.
RefSeqiWP_012982269.1. NC_013889.1.

3D structure databases

ProteinModelPortaliD3SFZ3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi396595.TK90_0858.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADC71373; ADC71373; TK90_0858.
KEGGitkm:TK90_0858.
PATRICi32525280. VBIThiSp13812_0854.

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.

Enzyme and pathway databases

BioCyciTSP396595:GH8D-884-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Thioalkalivibrio sp. K90mix."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Foster B., Sun H., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Sorokin D.Y., Muyzer G., Woyke T.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K90mixImported.

Entry informationi

Entry nameiD3SFZ3_THISK
AccessioniPrimary (citable) accession number: D3SFZ3
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 13, 2016
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.