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D3SBL6 (D3SBL6_THISK) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alanine racemase RuleBase RU000608 HAMAP-Rule MF_01201
EC=5.1.1.1 RuleBase RU000608 HAMAP-Rule MF_01201
Gene names
Ordered Locus Names:TK90_1930 EMBL ADC72421.1
OrganismThioalkalivibrio sp. (strain K90mix) [Complete proteome] [HAMAP] EMBL ADC72421.1
Taxonomic identifier396595 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Chromatiales › Ectothiorhodospiraceae › Thioalkalivibrio

Protein attributes

Sequence length367 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. RuleBase RU000608 HAMAP-Rule MF_01201 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000608 HAMAP-Rule MF_01201 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201 SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site351Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2651Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1301Substrate By similarity HAMAP-Rule MF_01201
Binding site3131Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue351N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
D3SBL6 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 30B852CBF442D3A3

FASTA36738,517
        10         20         30         40         50         60 
MRRAASIQLH PEALRHNLSV ARRLAPAVPM WSVIKAEGYG HGLLWAAQAL ADDSDGLAVS 

        70         80         90        100        110        120 
QVCEARALRA AGFEGALLVL QGPRDLSEVH ACTEFDLQPV LHHSAQLDHL EAASVVLPVV 

       130        140        150        160        170        180 
WIKLNTGMNR LGFEPAQAPK VATRLQAAGH GQGGLHWMTH MACADEPEHP QNARQLDAFA 

       190        200        210        220        230        240 
TTVAAFPGHR SVANSAALFA GWGRGGAAAG EYWGRPGIML YGAHPASVPA EHLPEGPDGD 

       250        260        270        280        290        300 
LRPAMTVQAP IIATQPLAPG STVGYGATWT ADAPGRVGIV AMGYADGYPR HAPSGTPVLV 

       310        320        330        340        350        360 
NGELCPLIGR VSMDMLAVDL SGVPAAQVGD RVTLWGEGLP VERVARAAGT ISYELLTRVA 


DRLQPGN

« Hide

References

[1]"Complete sequence of chromosome of Thioalkalivibrio sp. K90mix."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Foster B., Sun H., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Sorokin D.Y., Muyzer G., Woyke T.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K90mix.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001905 Genomic DNA. Translation: ADC72421.1.
RefSeqYP_003461157.1. NC_013889.1.

3D structure databases

ProteinModelPortalD3SBL6.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC72421; ADC72421; TK90_1930.
GeneID8807703.
KEGGtkm:TK90_1930.
PATRIC32527432. VBIThiSp13812_1914.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000031446.
KOK01775.

Enzyme and pathway databases

BioCycTSP396595:GH8D-1975-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3SBL6_THISK
AccessionPrimary (citable) accession number: D3SBL6
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 29, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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