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Protein
Submitted name:

ATP dependent DNA ligase

Gene

TK90_1908

Organism
Thioalkalivibrio sp. (strain K90mix)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciTSP396595:G1GHH-1965-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:TK90_1908Imported
OrganismiThioalkalivibrio sp. (strain K90mix)Imported
Taxonomic identifieri396595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesEctothiorhodospiraceaeThioalkalivibrio
Proteomesi
  • UP000009099 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi396595.TK90_1908

Structurei

3D structure databases

ProteinModelPortaliD3SBJ4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini72 – 225RNA_ligaseInterPro annotationAdd BLAST154

Phylogenomic databases

eggNOGiENOG4105S3H Bacteria
COG1423 LUCA
HOGENOMiHOG000224394
KOiK07468
OMAiEEKMNGY
OrthoDBiPOG091H2928

Family and domain databases

CDDicd07894 Adenylation_RNA_ligase, 1 hit
InterProiView protein in InterPro
IPR021122 RNA_ligase_dom_REL/Rnl2
IPR001072 RNA_ligase_Pab1020
PfamiView protein in Pfam
PF09414 RNA_ligase, 1 hit
PRINTSiPR01048 Y414FAMILY
TIGRFAMsiTIGR01209 TIGR01209, 1 hit

Sequencei

Sequence statusi: Complete.

D3SBJ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIERHVLQEA IDNRRAEALT FDELEYARLL EPVNHYPRGS VVLPDGSVVP
60 70 80 90 100
GYPSIGRIQS LEAGLPRQFE QPFWAEEKID GFNVRILRWQ GRVYAFSRGG
110 120 130 140 150
YVCAFSTDRV VDFMDPVIFN AEPNLILCAE IAGPDTPYLE GSTPRVAHDV
160 170 180 190 200
GLFVFDLMRL GQPGFVSQPE KFALIERHAL PPAPLHGWFT PRDTRALGEL
210 220 230 240 250
IRRLDEEGAE GLVLKTADGQ HRAKYVTGSS CVSDIRVCAE QLLDLPPEYF
260 270 280 290 300
TNRLTRLAIF LSEHPDRHHA DLDQALGQAL LSGLHGAVAQ HRRQGHVGHR
310 320 330 340 350
YRCRFREHAS ALRFMNHMRA TGGRHVSFAQ DAPRQEDGYW LLEFERQFDR
360
ITGTLASALA GDRQYD
Length:366
Mass (Da):41,390
Last modified:April 20, 2010 - v1
Checksum:i4F091D7DC18F0BDE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001905 Genomic DNA Translation: ADC72399.1
RefSeqiWP_012983274.1, NC_013889.1

Genome annotation databases

EnsemblBacteriaiADC72399; ADC72399; TK90_1908
KEGGitkm:TK90_1908

Similar proteinsi

Entry informationi

Entry nameiD3SBJ4_THISK
AccessioniPrimary (citable) accession number: D3SBJ4
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 28, 2018
This is version 44 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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