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Protein
Submitted name:

ATP dependent DNA ligase

Gene

TK90_1908

Organism
Thioalkalivibrio sp. (strain K90mix)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTSP396595:GH8D-1953-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:TK90_1908Imported
OrganismiThioalkalivibrio sp. (strain K90mix)Imported
Taxonomic identifieri396595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesEctothiorhodospiraceaeThioalkalivibrio
ProteomesiUP000009099 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD3SBJ4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000224394.
KOiK07468.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

D3SBJ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIERHVLQEA IDNRRAEALT FDELEYARLL EPVNHYPRGS VVLPDGSVVP
60 70 80 90 100
GYPSIGRIQS LEAGLPRQFE QPFWAEEKID GFNVRILRWQ GRVYAFSRGG
110 120 130 140 150
YVCAFSTDRV VDFMDPVIFN AEPNLILCAE IAGPDTPYLE GSTPRVAHDV
160 170 180 190 200
GLFVFDLMRL GQPGFVSQPE KFALIERHAL PPAPLHGWFT PRDTRALGEL
210 220 230 240 250
IRRLDEEGAE GLVLKTADGQ HRAKYVTGSS CVSDIRVCAE QLLDLPPEYF
260 270 280 290 300
TNRLTRLAIF LSEHPDRHHA DLDQALGQAL LSGLHGAVAQ HRRQGHVGHR
310 320 330 340 350
YRCRFREHAS ALRFMNHMRA TGGRHVSFAQ DAPRQEDGYW LLEFERQFDR
360
ITGTLASALA GDRQYD
Length:366
Mass (Da):41,390
Last modified:April 20, 2010 - v1
Checksum:i4F091D7DC18F0BDE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001905 Genomic DNA. Translation: ADC72399.1.
RefSeqiWP_012983274.1. NC_013889.1.
YP_003461135.1. NC_013889.1.

Genome annotation databases

EnsemblBacteriaiADC72399; ADC72399; TK90_1908.
KEGGitkm:TK90_1908.
PATRICi32527388. VBIThiSp13812_1892.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001905 Genomic DNA. Translation: ADC72399.1.
RefSeqiWP_012983274.1. NC_013889.1.
YP_003461135.1. NC_013889.1.

3D structure databases

ProteinModelPortaliD3SBJ4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADC72399; ADC72399; TK90_1908.
KEGGitkm:TK90_1908.
PATRICi32527388. VBIThiSp13812_1892.

Phylogenomic databases

HOGENOMiHOG000224394.
KOiK07468.

Enzyme and pathway databases

BioCyciTSP396595:GH8D-1953-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Thioalkalivibrio sp. K90mix."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Foster B., Sun H., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Sorokin D.Y., Muyzer G., Woyke T.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K90mixImported.

Entry informationi

Entry nameiD3SBJ4_THISK
AccessioniPrimary (citable) accession number: D3SBJ4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 1, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.