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D3SBJ4 (D3SBJ4_THISK) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:TK90_1908 EMBL ADC72399.1
OrganismThioalkalivibrio sp. (strain K90mix) [Complete proteome] [HAMAP] EMBL ADC72399.1
Taxonomic identifier396595 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaChromatialesEctothiorhodospiraceaeThioalkalivibrio

Protein attributes

Sequence length366 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADC72399.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3SBJ4 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 4F091D7DC18F0BDE

FASTA36641,390
        10         20         30         40         50         60 
MIERHVLQEA IDNRRAEALT FDELEYARLL EPVNHYPRGS VVLPDGSVVP GYPSIGRIQS 

        70         80         90        100        110        120 
LEAGLPRQFE QPFWAEEKID GFNVRILRWQ GRVYAFSRGG YVCAFSTDRV VDFMDPVIFN 

       130        140        150        160        170        180 
AEPNLILCAE IAGPDTPYLE GSTPRVAHDV GLFVFDLMRL GQPGFVSQPE KFALIERHAL 

       190        200        210        220        230        240 
PPAPLHGWFT PRDTRALGEL IRRLDEEGAE GLVLKTADGQ HRAKYVTGSS CVSDIRVCAE 

       250        260        270        280        290        300 
QLLDLPPEYF TNRLTRLAIF LSEHPDRHHA DLDQALGQAL LSGLHGAVAQ HRRQGHVGHR 

       310        320        330        340        350        360 
YRCRFREHAS ALRFMNHMRA TGGRHVSFAQ DAPRQEDGYW LLEFERQFDR ITGTLASALA 


GDRQYD 

« Hide

References

[1]"Complete sequence of chromosome of Thioalkalivibrio sp. K90mix."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Foster B., Sun H., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Sorokin D.Y., Muyzer G., Woyke T.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K90mix.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001905 Genomic DNA. Translation: ADC72399.1.
RefSeqYP_003461135.1. NC_013889.1.

3D structure databases

ProteinModelPortalD3SBJ4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC72399; ADC72399; TK90_1908.
GeneID8807681.
KEGGtkm:TK90_1908.
PATRIC32527388. VBIThiSp13812_1892.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000224394.
KOK07468.

Enzyme and pathway databases

BioCycTSP396595:GH8D-1953-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSPR01048. Y414FAMILY.
TIGRFAMsTIGR01209. TIGR01209. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3SBJ4_THISK
AccessionPrimary (citable) accession number: D3SBJ4
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 16, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)