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D3SBJ4

- D3SBJ4_THISK

UniProt

D3SBJ4 - D3SBJ4_THISK

Protein
Submitted name:

ATP dependent DNA ligase

Gene

TK90_1908

Organism
Thioalkalivibrio sp. (strain K90mix)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTSP396595:GH8D-1953-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:TK90_1908Imported
    OrganismiThioalkalivibrio sp. (strain K90mix)Imported
    Taxonomic identifieri396595 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesEctothiorhodospiraceaeThioalkalivibrio
    ProteomesiUP000009099: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD3SBJ4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000224394.
    KOiK07468.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR001072. Uncharacterised_MJ0414.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    PRINTSiPR01048. Y414FAMILY.
    TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D3SBJ4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIERHVLQEA IDNRRAEALT FDELEYARLL EPVNHYPRGS VVLPDGSVVP    50
    GYPSIGRIQS LEAGLPRQFE QPFWAEEKID GFNVRILRWQ GRVYAFSRGG 100
    YVCAFSTDRV VDFMDPVIFN AEPNLILCAE IAGPDTPYLE GSTPRVAHDV 150
    GLFVFDLMRL GQPGFVSQPE KFALIERHAL PPAPLHGWFT PRDTRALGEL 200
    IRRLDEEGAE GLVLKTADGQ HRAKYVTGSS CVSDIRVCAE QLLDLPPEYF 250
    TNRLTRLAIF LSEHPDRHHA DLDQALGQAL LSGLHGAVAQ HRRQGHVGHR 300
    YRCRFREHAS ALRFMNHMRA TGGRHVSFAQ DAPRQEDGYW LLEFERQFDR 350
    ITGTLASALA GDRQYD 366
    Length:366
    Mass (Da):41,390
    Last modified:April 20, 2010 - v1
    Checksum:i4F091D7DC18F0BDE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001905 Genomic DNA. Translation: ADC72399.1.
    RefSeqiWP_012983274.1. NC_013889.1.
    YP_003461135.1. NC_013889.1.

    Genome annotation databases

    EnsemblBacteriaiADC72399; ADC72399; TK90_1908.
    GeneIDi8807681.
    KEGGitkm:TK90_1908.
    PATRICi32527388. VBIThiSp13812_1892.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001905 Genomic DNA. Translation: ADC72399.1 .
    RefSeqi WP_012983274.1. NC_013889.1.
    YP_003461135.1. NC_013889.1.

    3D structure databases

    ProteinModelPortali D3SBJ4.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADC72399 ; ADC72399 ; TK90_1908 .
    GeneIDi 8807681.
    KEGGi tkm:TK90_1908.
    PATRICi 32527388. VBIThiSp13812_1892.

    Phylogenomic databases

    HOGENOMi HOG000224394.
    KOi K07468.

    Enzyme and pathway databases

    BioCyci TSP396595:GH8D-1953-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR001072. Uncharacterised_MJ0414.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    PRINTSi PR01048. Y414FAMILY.
    TIGRFAMsi TIGR01209. TIGR01209. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Thioalkalivibrio sp. K90mix."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Foster B., Sun H., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Sorokin D.Y., Muyzer G., Woyke T.
      Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K90mixImported.

    Entry informationi

    Entry nameiD3SBJ4_THISK
    AccessioniPrimary (citable) accession number: D3SBJ4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3