D3SBJ4 (D3SBJ4_THISK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADC72399.1

Gene names

Ordered Locus Names:

TK90_1908 EMBL ADC72399.1

Organism

Thioalkalivibrio sp. (strain K90mix) [Complete proteome] [HAMAP] EMBL ADC72399.1

Taxonomic identifier

396595 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Chromatiales › Ectothiorhodospiraceae › Thioalkalivibrio

Protein attributes

Sequence length	366 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADC72399.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3SBJ4 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: 4F091D7DC18F0BDE	FASTA	366	41,390
	10 20 30 40 50 60 MIERHVLQEA IDNRRAEALT FDELEYARLL EPVNHYPRGS VVLPDGSVVP GYPSIGRIQS 70 80 90 100 110 120 LEAGLPRQFE QPFWAEEKID GFNVRILRWQ GRVYAFSRGG YVCAFSTDRV VDFMDPVIFN 130 140 150 160 170 180 AEPNLILCAE IAGPDTPYLE GSTPRVAHDV GLFVFDLMRL GQPGFVSQPE KFALIERHAL 190 200 210 220 230 240 PPAPLHGWFT PRDTRALGEL IRRLDEEGAE GLVLKTADGQ HRAKYVTGSS CVSDIRVCAE 250 260 270 280 290 300 QLLDLPPEYF TNRLTRLAIF LSEHPDRHHA DLDQALGQAL LSGLHGAVAQ HRRQGHVGHR 310 320 330 340 350 360 YRCRFREHAS ALRFMNHMRA TGGRHVSFAQ DAPRQEDGYW LLEFERQFDR ITGTLASALA GDRQYD

References

[1]

"Complete sequence of chromosome of Thioalkalivibrio sp. K90mix." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Foster B., Sun H., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Sorokin D.Y., Muyzer G., Woyke T. Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K90mix.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001905 Genomic DNA. Translation: ADC72399.1.
RefSeq	YP_003461135.1. NC_013889.1.
3D structure databases
ProteinModelPortal	D3SBJ4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADC72399; ADC72399; TK90_1908.
GeneID	8807681.
KEGG	tkm:TK90_1908.
PATRIC	32527388. VBIThiSp13812_1892.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000224394.
KO	K07468.
Enzyme and pathway databases
BioCyc	TSP396595:GH8D-1953-MONOMER.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR001072. Uncharacterised_MJ0414. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
PRINTS	PR01048. Y414FAMILY.
TIGRFAMs	TIGR01209. TIGR01209. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D3SBJ4_THISK

Accession

Primary (citable) accession number: D3SBJ4

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 29, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)