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D3S3X8 (D3S3X8_METSF) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribulose bisphosphate carboxylase HAMAP-Rule MF_01133
Short name=RuBisCO HAMAP-Rule MF_01133
EC=4.1.1.39 HAMAP-Rule MF_01133
Gene names
Name:rbcL HAMAP-Rule MF_01133
Ordered Locus Names:MFS40622_0859
OrganismMethanocaldococcus sp. (strain FS406-22) [Complete proteome] [HAMAP]
Taxonomic identifier644281 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Methanococci › Methanococcales › Methanocaldococcaceae › Methanocaldococcus

Protein attributes

Sequence length425 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O. HAMAP-Rule MF_01133

3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2. HAMAP-Rule MF_01133

Cofactor

Binds 1 magnesium ion per subunit By similarity. HAMAP-Rule MF_01133

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_01133

Miscellaneous

The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In contrast to form I RuBisCO, the form III RuBisCO are composed solely of large subunits By similarity. HAMAP-Rule MF_01133

Sequence similarities

Belongs to the RuBisCO large chain family. Type III subfamily. HAMAP-Rule MF_01133

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1531Proton acceptor By similarity HAMAP-Rule MF_01133
Active site2691Proton acceptor By similarity HAMAP-Rule MF_01133
Metal binding1791Magnesium; via carbamate group By similarity HAMAP-Rule MF_01133
Metal binding1811Magnesium By similarity HAMAP-Rule MF_01133
Metal binding1821Magnesium By similarity HAMAP-Rule MF_01133
Binding site1011Substrate; in homodimeric partner By similarity HAMAP-Rule MF_01133
Binding site1551Substrate By similarity HAMAP-Rule MF_01133
Binding site2701Substrate By similarity HAMAP-Rule MF_01133
Binding site3021Substrate By similarity HAMAP-Rule MF_01133
Binding site3531Substrate By similarity HAMAP-Rule MF_01133
Site3091Transition state stabilizer By similarity HAMAP-Rule MF_01133

Amino acid modifications

Modified residue1791N6-carboxylysine By similarity HAMAP-Rule MF_01133

Sequences

Sequence LengthMass (Da)Tools
D3S3X8 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: B582FABD358CCCCA

FASTA42547,959
        10         20         30         40         50         60 
MDYINLNYTP NENDLLSCMI IKGENLEKLA NEIAGESSIG TWTKVQTMKS DIYEKLRPKV 

        70         80         90        100        110        120 
YEIKEIGNDG KYKVGLIKIA YPLYDFEINN MPGVLAGIAG NIFGMKIAKG LRILDFRFPE 

       130        140        150        160        170        180 
EFVKAYKGPR FGIEGVRETL KIKERPLLGT IVKPKVGLKT EEHAKVAYEA WVGGVDLVKD 

       190        200        210        220        230        240 
DENLTSQEFN KFEDRIYKTL EMRDKAEEET GERKAYMPNI TAPYREMIRR VEIAEDAGSE 

       250        260        270        280        290        300 
YVMIDVVVCG FSAVQSFREE EFKFIIHAHR AMHAAMTRSR DFGISMLVLA KIYRLLGVDQ 

       310        320        330        340        350        360 
LHIGTVVGKM EGGEKEVKSI RDEIVCDKVE ADDENKFFNQ EWFDIKPVFP VSSGGVHPRL 

       370        380        390        400        410        420 
VPKIVEILGR DLIIQAGGGV HGHPDGTRAG AKAMRAAIEA IIEGKSLEEK AEEVAELKKA 


LEYWK

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References

[1]"Complete sequence of chromosome of Methanocaldococcus sp. FS406-22."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Sieprawska-Lupa M., Leigh J., Whitman W.B., Woyke T.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: FS406-22.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001901 Genomic DNA. Translation: ADC69542.1.
RefSeqYP_003458278.1. NC_013887.1.

3D structure databases

ProteinModelPortalD3S3X8.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC69542; ADC69542; MFS40622_0859.
GeneID8804702.
KEGGmfs:MFS40622_0859.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000230831.
KOK01601.
OMAHRAMHAA.

Enzyme and pathway databases

BioCycMSP644281:GI4H-882-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPMF_01133. RuBisCO_L_type3.
InterProIPR017712. RuBisCO_III.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF51649. RuBisCO_large. 1 hit.
SSF54966. RuBisCO_large. 1 hit.
TIGRFAMsTIGR03326. rubisco_III. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3S3X8_METSF
AccessionPrimary (citable) accession number: D3S3X8
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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