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D3RMZ4 (D3RMZ4_ALLVD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D3RMZ4 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: D671A7103DAA4D66

FASTA39643,137
        10         20         30         40         50         60 
MSKEKFQRSK PHVNVGTIGH VDHGKTTLTA AITTHQAKKF GGEARAYDQI DNAPEERERG 

        70         80         90        100        110        120 
ITIATAHVEY ESDKRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLSRQVGVPY IVVYLNKADM VDDAELLELV EMEVRELLSS YDFPGDDTPI ITGSAKLALE 

       190        200        210        220        230        240 
GDTSEIGGPS IDRLMEALDS YIPEPERAID GAFLMPIEDV FSISGRGTVV TGRVERGIVK 

       250        260        270        280        290        300 
VGEEVAIVGI KDTVKTICTG VEMFRKLLDQ GQAGDNIGAL LRGTKREDVE RGQVLAKPGS 

       310        320        330        340        350        360 
ITPHTHFEAE VYVLSKEEGG RHTPFFNGYR PQFYFRTTDV TGACELPEGI EMVMPGDNVK 

       370        380        390 
MTIKLIAPIA MEEGLRFAVR EGGRTVGAGV VAKIIE 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of chromosome of Allochromatium vinosum DSM 180."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Zigann R., Dahl C., Woyke T.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17899 / DSM 180 / NBRC 103801 / D.
[2]US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Zigann R., Dahl C., Woyke T.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 180 EMBL ADC63282.1.
[3]"Complete genome sequence of Allochromatium vinosum DSM 180(T)."
Weissgerber T., Zigann R., Bruce D., Chang Y.J., Detter J.C., Han C., Hauser L., Jeffries C.D., Land M., Munk A.C., Tapia R., Dahl C.
Stand. Genomic Sci. 5:311-330(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 180 EMBL ADC63282.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001896 Genomic DNA. Translation: ADC63282.1.
CP001896 Genomic DNA. Translation: ADC63294.1.
RefSeqYP_003444314.1. NC_013851.1.
YP_003444326.1. NC_013851.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC63282; ADC63282; Alvin_2365.
ADC63294; ADC63294; Alvin_2377.
GeneID8787738.
8787751.
KEGGalv:Alvin_2365.
alv:Alvin_2377.
PATRIC31924506. VBIAllVin64954_2340.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.

Enzyme and pathway databases

BioCycAVIN572477:GCJK-2411-MONOMER.
AVIN572477:GCJK-2424-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3RMZ4_ALLVD
AccessionPrimary (citable) accession number: D3RMZ4
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 16, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)