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D3RMZ4

- D3RMZ4_ALLVD

UniProt

D3RMZ4 - D3RMZ4_ALLVD

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Protein

Elongation factor Tu

Gene

tuf

Organism
Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (Chromatium vinosum)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi19 – 268GTPUniRule annotation
Nucleotide bindingi81 – 855GTPUniRule annotation
Nucleotide bindingi136 – 1394GTPUniRule annotation

GO - Molecular functioni

  1. GTPase activity Source: InterPro
  2. GTP binding Source: UniProtKB-HAMAP
  3. translation elongation factor activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Elongation factorUniRule annotation

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciAVIN572477:GCJK-2411-MONOMER.
AVIN572477:GCJK-2424-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor TuUniRule annotation
Short name:
EF-TuUniRule annotation
Gene namesi
Name:tufUniRule annotation
Ordered Locus Names:Alvin_2365Imported, Alvin_2377Imported
OrganismiAllochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (Chromatium vinosum)Imported
Taxonomic identifieri572477 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeAllochromatium
ProteomesiUP000001441: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Monomer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000229290.
KOiK02358.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3RMZ4 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKEKFQRSK PHVNVGTIGH VDHGKTTLTA AITTHQAKKF GGEARAYDQI
60 70 80 90 100
DNAPEERERG ITIATAHVEY ESDKRHYAHV DCPGHADYVK NMITGAAQMD
110 120 130 140 150
GAILVCSAAD GPMPQTREHI LLSRQVGVPY IVVYLNKADM VDDAELLELV
160 170 180 190 200
EMEVRELLSS YDFPGDDTPI ITGSAKLALE GDTSEIGGPS IDRLMEALDS
210 220 230 240 250
YIPEPERAID GAFLMPIEDV FSISGRGTVV TGRVERGIVK VGEEVAIVGI
260 270 280 290 300
KDTVKTICTG VEMFRKLLDQ GQAGDNIGAL LRGTKREDVE RGQVLAKPGS
310 320 330 340 350
ITPHTHFEAE VYVLSKEEGG RHTPFFNGYR PQFYFRTTDV TGACELPEGI
360 370 380 390
EMVMPGDNVK MTIKLIAPIA MEEGLRFAVR EGGRTVGAGV VAKIIE
Length:396
Mass (Da):43,137
Last modified:April 20, 2010 - v1
Checksum:iD671A7103DAA4D66
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001896 Genomic DNA. Translation: ADC63282.1.
CP001896 Genomic DNA. Translation: ADC63294.1.
RefSeqiYP_003444314.1. NC_013851.1.
YP_003444326.1. NC_013851.1.

Genome annotation databases

EnsemblBacteriaiADC63282; ADC63282; Alvin_2365.
ADC63294; ADC63294; Alvin_2377.
GeneIDi8787738.
8787751.
KEGGialv:Alvin_2365.
alv:Alvin_2377.
PATRICi31924506. VBIAllVin64954_2340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001896 Genomic DNA. Translation: ADC63282.1 .
CP001896 Genomic DNA. Translation: ADC63294.1 .
RefSeqi YP_003444314.1. NC_013851.1.
YP_003444326.1. NC_013851.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADC63282 ; ADC63282 ; Alvin_2365 .
ADC63294 ; ADC63294 ; Alvin_2377 .
GeneIDi 8787738.
8787751.
KEGGi alv:Alvin_2365.
alv:Alvin_2377.
PATRICi 31924506. VBIAllVin64954_2340.

Phylogenomic databases

HOGENOMi HOG000229290.
KOi K02358.

Enzyme and pathway databases

BioCyci AVIN572477:GCJK-2411-MONOMER.
AVIN572477:GCJK-2424-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
HAMAPi MF_00118_B. EF_Tu_B.
InterProi IPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view ]
Pfami PF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view ]
PRINTSi PR00315. ELONGATNFCT.
SUPFAMi SSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEi PS00301. EFACTOR_GTP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of chromosome of Allochromatium vinosum DSM 180."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Zigann R., Dahl C., Woyke T.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17899 / DSM 180 / NBRC 103801 / DImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DSM 180Imported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DSM 180Imported.

Entry informationi

Entry nameiD3RMZ4_ALLVD
AccessioniPrimary (citable) accession number: D3RMZ4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 29, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

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