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D3R9S2 (D3R9S2_KLEVT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Beta-galactosidase PIRNR PIRNR001084
Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084
Gene names
Ordered Locus Names:Kvar_3950
OrganismKlebsiella variicola (strain At-22) [Complete proteome] [HAMAP] EMBL ADC59829.1
Taxonomic identifier640131 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Klebsiella ›

Protein attributes

Sequence length685 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1571Proton donor By similarity PIRSR PIRSR001084-1
Active site3141Nucleophile By similarity PIRSR PIRSR001084-1
Metal binding1221Zinc By similarity PIRSR PIRSR001084-3
Metal binding1621Zinc By similarity PIRSR PIRSR001084-3
Metal binding1641Zinc By similarity PIRSR PIRSR001084-3
Metal binding1671Zinc By similarity PIRSR PIRSR001084-3
Binding site1181Substrate By similarity PIRSR PIRSR001084-2
Binding site1561Substrate By similarity PIRSR PIRSR001084-2
Binding site3221Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
D3R9S2 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: FF0AA26E29054EA7

FASTA68577,496
        10         20         30         40         50         60 
MNKFAPLHPK VSTLLHGADY NPEQWENDPD IIDKDIAMMQ QAKCNVMSVG IFSWAKLEPR 

        70         80         90        100        110        120 
EGVFNFAWLD TILDKLYAAG IHVFLATPSG ARPAWMSQRY PQVLRVGRDR VPALHGGRHN 

       130        140        150        160        170        180 
HCMSSPVYRE KTLKINTLLA ERYSSHPAVL GWHISNEYGG ECHCDLCQNR FRDWLKARYQ 

       190        200        210        220        230        240 
TLENLNQAWW STFWSHTYTD WSQIESPAPQ GEVSIHGLNL DWHRFNTAQV TDFCRHEIAP 

       250        260        270        280        290        300 
LKAANASLPV TTNFMEYFYD YDYWQLAKAL DFISWDSYPM WHRDKDETAL ACYTAMYHDM 

       310        320        330        340        350        360 
MRSLKGGKPF VLMESTPGAT NWQPTSKLKK PGMHILSSLQ AVAHGADSVQ YFQWRKSRGS 

       370        380        390        400        410        420 
VEKFHGAVVD HVGHIDTRIG REVSQLGEIL SKLPEVRGCR TEAKVAIIFD QQNRWALDDA 

       430        440        450        460        470        480 
QGPRNLGMEY EKTVNEHYRP FWEQGIAVDV IDADVDLTPY RLVIAPMLYM VRDGFAARAE 

       490        500        510        520        530        540 
AFVASGGHLV TTYWTGIVNE SDLCYLGGFP GPLRNLLGIW AEEIDCLNDG EFNLVQGLAG 

       550        560        570        580        590        600 
NQCGLQGPYQ VRHLCELIHT ESAQTLATYR DDFYAGRPAV TVNGFGKGKA WHVASRNDLA 

       610        620        630        640        650        660 
FQRDFFAALS RELDLPRAIA ADLPPGVVAT ARTDGESTFV FLQNYSAQSH TLTLPPGYRD 

       670        680 
CLTDAAAPDP LILSAWDCRI LRRHA

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References

[1]"Complete sequence of Klebsiella variicola At-22."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Davenport K., Brettin T., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Pinto A., Currie C., Woyke T.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: At-22.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001891 Genomic DNA. Translation: ADC59829.1.
RefSeqYP_003440861.1. NC_013850.1.

3D structure databases

ProteinModelPortalD3R9S2.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC59829; ADC59829; Kvar_3950.
GeneID8784127.
KEGGkva:Kvar_3950.
PATRIC32227976. VBIKleVar54872_3908.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000117811.
KOK12308.
OMASDTVQYF.

Enzyme and pathway databases

BioCycKVAR640131:GHXG-4014-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR013739. Beta_galactosidase_C.
IPR013738. Beta_galactosidase_Trimer.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08533. Glyco_hydro_42C. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3R9S2_KLEVT
AccessionPrimary (citable) accession number: D3R9S2
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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