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D3R538 (D3R538_BIFAB) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length559 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D3R538 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: A9A8C1ED2FF79E1B

FASTA55962,803
        10         20         30         40         50         60 
MTDFTTRLNQ AMELRNIKQI DFVKAAQDHG VKLGRSHISQ YVSGKTRPRR DIERFLAAVL 

        70         80         90        100        110        120 
RVNADWLAGE SVPFDDDPET FAKIEHVSPD ADFEHIKRVE QNSSIQNSEH IEHNNELAEI 

       130        140        150        160        170        180 
EQEQDMEAAA NNNVQDPSFP DVPSSVTSEP MNIGSRRVFT KSHKLDNVLY DVRGPVVNEA 

       190        200        210        220        230        240 
ARMEAAGMHV MKLNIGNPAP FGFRTPDEVV YDMAQQLTDT EGYSASKGLF SARKAIMQYA 

       250        260        270        280        290        300 
QLKNLPNVGV EDIYTGNGVS ELINLSMSAL LDDGDEVLLP APDYPLWTAC VTLAGGKPVH 

       310        320        330        340        350        360 
YVCDEQSEWY PDIDDMRAKI TDRTKAIVII NPNNPTGALY PTEVLQQIVE LARQHQLMIF 

       370        380        390        400        410        420 
SDEIYDRLVM DGLTHTSIAS LAPDLFCVTY SGLSKSHMIA GYRIGWMILS GNKSIAKDYI 

       430        440        450        460        470        480 
EGLDMLTNMR ICSNVPAQSI VQTALGGHQS VNDYLVPGGR IYEQREYIYN ALNSIDGITA 

       490        500        510        520        530        540 
VKPKAAFYIF PKIDAKKFNI RNDEQFALDL LHDEKLLIVQ GTGFNWKDPD HFRVVYLPRV 

       550 
EVLKGAVDKM THFFSHYRQ 

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References

[1]"Complete genome sequence of Bifidobacterium animalis subsp. lactis BB-12, a widely consumed probiotic strain."
Garrigues C., Johansen E., Pedersen M.B.
J. Bacteriol. 192:2467-2468(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BB-12 EMBL ADC85862.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001853 Genomic DNA. Translation: ADC85862.1.
RefSeqYP_005576872.1. NC_017214.1.

3D structure databases

ProteinModelPortalD3R538.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC85862; ADC85862; BIF_02076.
GeneID12176462.
KEGGbbb:BIF_02076.
PATRIC36803598. VBIBifAni31632_1329.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000223042.
KOK14260.
OMARIVFLPH.

Enzyme and pathway databases

BioCycBANI552531:GL90-1414-MONOMER.

Family and domain databases

Gene3D1.10.260.40. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004839. Aminotransferase_I/II.
IPR010982. Lambda_DNA-bd_dom.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMSSF47413. SSF47413. 1 hit.
SSF53383. SSF53383. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3R538_BIFAB
AccessionPrimary (citable) accession number: D3R538
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 16, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)