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D3R4D8 (D3R4D8_BIFAB) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length476 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. RuleBase RU000608 HAMAP-Rule MF_01201 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000608 HAMAP-Rule MF_01201 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201 RuleBase RU004247 SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site871Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site3271Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1891Substrate By similarity HAMAP-Rule MF_01201
Binding site3911Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue871N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
D3R4D8 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: E0D46D6F4D371430

FASTA47651,535
        10         20         30         40         50         60 
MGCESTSHAY PLTHSSYEQA TMVCMSVSAL EEWQFSSEQG ERNYNQALRE YPAQVIVDLA 

        70         80         90        100        110        120 
ALRDNMRHLV DITNREGGPT EVMGVVKADA YGHGLVPSAL AALAGGATWL GVAQAREALA 

       130        140        150        160        170        180 
LRNAGIGVDR ARVLTWVNNP LHAPYDDLIA ADVDLSVATL TAIQKIAEAA RAVGKPARVH 

       190        200        210        220        230        240 
IKVDTGFGRN GFTLAQIDSA IDLLLPLVDE GVFEIVGQWS HLAVADAPAV GEFVEKTDEQ 

       250        260        270        280        290        300 
IRVFEEFTSR LHARGIEPRI RHLANTAATL SRPEIHYDLV RPGVALYGYE ADPAMGTPSK 

       310        320        330        340        350        360 
YELRPAMTLQ AQLSSVKNVG AGEGLSYGRV YVTDEPTSAA IVPVGYADGI HRSASGFNEA 

       370        380        390        400        410        420 
GSKHVNKPGA PVRVMTRDGA RIFHVSGRVC MDQFILDLHG DAENMGVHIG DTVELFGPGR 

       430        440        450        460        470 
GEDYLEPTAD DWARAADTIS YEIFTCLRNR VPRLYANAFE VLDETDLGKL DQSTLL

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References

[1]"Complete genome sequence of Bifidobacterium animalis subsp. lactis BB-12, a widely consumed probiotic strain."
Garrigues C., Johansen E., Pedersen M.B.
J. Bacteriol. 192:2467-2468(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BB-12.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001853 Genomic DNA. Translation: ADC85612.1.
RefSeqYP_005576622.1. NC_017214.1.

3D structure databases

ProteinModelPortalD3R4D8.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC85612; ADC85612; BIF_02122.
GeneID12176195.
KEGGbbb:BIF_02122.
PATRIC36803068. VBIBifAni31632_1077.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000031444.
KOK01775.
OMAGQWQDIA.

Enzyme and pathway databases

BioCycBANI552531:GL90-1151-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3R4D8_BIFAB
AccessionPrimary (citable) accession number: D3R4D8
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 29, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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