D3R3U3 (D3R3U3_BIFAB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S8 HAMAP-Rule MF_01302

Gene names

Name:	rpsH HAMAP-Rule MF_01302
Ordered Locus Names:	BIF_00215

Organism

Bifidobacterium animalis subsp. lactis (strain BB-12) [Complete proteome] [HAMAP] EMBL ADC85417.1

Taxonomic identifier

552531 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium › Bifidobacterium animalis › Bifidobacterium animalis subsp. lactis

Protein attributes

Sequence length	132 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit By similarity. HAMAP-Rule MF_01302
Subunit structure	Part of the 30S ribosomal subunit. Contacts proteins S5 and S12 By similarity. HAMAP-Rule MF_01302
Sequence similarities	Belongs to the ribosomal protein S8P family. HAMAP-Rule MF_01302

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01302
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01302 EMBL ADC85417.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3R3U3 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: FADAB87AFDD8B291	FASTA	132	14,481
	10 20 30 40 50 60 MTMTDPIADM LTRLRNASAA KHETVDMPYS KFKKNIAEIL KREGYIADFT AKEARVGQTL 70 80 90 100 110 120 EVTLKYGPHG ERSIQGIKRV SKPGLRRYAK SDALPMPLGG LGIAIISTSS GLLTQKECLD 130 RGIGGEIVAY VW

References

[1]	"Complete genome sequence of Bifidobacterium animalis subsp. lactis BB-12, a widely consumed probiotic strain." Garrigues C., Johansen E., Pedersen M.B. J. Bacteriol. 192:2467-2468(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BB-12.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001853 Genomic DNA. Translation: ADC85417.1.
RefSeq	YP_005576427.1. NC_017214.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADC85417; ADC85417; BIF_00215.
GeneID	12177304.
KEGG	bbb:BIF_00215.
PATRIC	36802674. VBIBifAni31632_0888.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000204095.
KO	K02994.
OMA	QRVSKPG.
Family and domain databases
HAMAP	MF_01302_B. Ribosomal_S8_B.
InterPro	IPR000630. Ribosomal_S8. [Graphical view]
PANTHER	PTHR11758. PTHR11758. 1 hit.
Pfam	PF00410. Ribosomal_S8. 1 hit. [Graphical view]
SUPFAM	SSF56047. Ribosomal_S8. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D3R3U3_BIFAB

Accession

Primary (citable) accession number: D3R3U3

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)