D3QJX5 (D3QJX5_ECOCB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003887
EC=5.4.99.- RuleBase RU003887

Gene names

Name:	rsuA EMBL ADD57271.1
Ordered Locus Names:	G2583_2726 EMBL ADD57271.1

Organism

Escherichia coli O55:H7 (strain CB9615 / EPEC) [Complete proteome] [HAMAP] EMBL ADD57271.1

Taxonomic identifier

701177 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli › Escherichia coli O55:H7

Protein attributes

Sequence length	231 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887 Contains 1 S4 RNA-binding domain. SAAS SAAS006145

Ontologies

Keywords
Ligand	RNA-binding SAAS SAAS006145
Molecular function	Isomerase SAAS SAAS006145 RuleBase RU003887
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3QJX5 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: 04EB7154931C58F7	FASTA	231	25,865
	10 20 30 40 50 60 MRLDKFIAQQ LGVSRAIAGR EIRGNRVTVD GEIVRNAAFK LLPEHDVAYD GNPLAQQHGP 70 80 90 100 110 120 RYFMLNKPQG YVCSTDDPDH PTVLYFLDEP VAWKLHAAGR LDIDTTGLVL MTDDGQWSHR 130 140 150 160 170 180 ITSPRHHCEK TYLVTLESPV ADDTAEQFAK GVQLHNEKDL TKPAVLEVIT PTQVRLTISE 190 200 210 220 230 GRYHQVKRMF AAVGNHVVEL HRERIGGITL DADLAPGEYR PLTEEEIASV V

References

[1]	"Derivation of Escherichia coli O157:H7 from its O55:H7 precursor." Zhou Z., Li X., Liu B., Beutin L., Xu J., Ren Y., Feng L., Lan R., Reeves P.R., Wang L. PLoS ONE 5:E8700-E8700(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CB9615 / EPEC.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001846 Genomic DNA. Translation: ADD57271.1.
RefSeq	YP_003500255.1. NC_013941.1.
3D structure databases
ProteinModelPortal	D3QJX5.
SMR	D3QJX5. Positions 1-231.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADD57271; ADD57271; G2583_2726.
GeneID	8871688.
KEGG	eok:G2583_2726.
PATRIC	35344551. VBIEscCol154499_2750.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000044954.
KO	K06183.
Enzyme and pathway databases
BioCyc	ECOL701177:GI1N-2835-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR018496. PsdUridine_synth_RsuA/RluB_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS01149. PSI_RSU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D3QJX5_ECOCB

Accession

Primary (citable) accession number: D3QJX5

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)