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D3QIM1 (D3QIM1_STALH) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length382 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. RuleBase RU004247 HAMAP-Rule MF_01201 SAAS SAAS009006

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site391Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2651Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1381Substrate By similarity HAMAP-Rule MF_01201
Binding site3121Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue391N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
D3QIM1 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 89F3BF757B662D47

FASTA38243,106
        10         20         30         40         50         60 
MSDKYYRNTY INVDLAAINN NYRQFTQLHD NKTVIPVIKA NGYGLGSVRI AQYLVDHGAS 

        70         80         90        100        110        120 
FFAVATLDEA IELRMHGIKA QILILGVIPI EDINKAIQHR VAITVPSKSW LSSAIKAIND 

       130        140        150        160        170        180 
DNEKRLWLHI KLDTGMGRLG IKNQAEYHQT IHLIEQHEHL VFEGVYTHFA CADEPGDSAQ 

       190        200        210        220        230        240 
QQYQCFKTWV TSTDMPRYVH AQNSAGALMI DADICNAVRL GISLYGYYPS EYVKEEADIE 

       250        260        270        280        290        300 
LQPSAELMTQ IVQTKELQPG ESVSYGSTYT AQSPIKIGII PIGYADGYLR IMQGHFVNVK 

       310        320        330        340        350        360 
GQQCEVIGRV CMDQTIIKIN DDILEGDEVC VISKQQDSIQ SVDAIAKQQK TINYEVLCNL 

       370        380 
GRRLPRIYKF DNKEYIINDL LK 

« Hide

References

[1]"Complete genome sequence of Staphylococcus lugdunensis strain HKU09-01."
Tse H., Tsoi H.W., Leung S.P., Lau S.K., Woo P.C., Yuen K.Y.
J. Bacteriol. 192:1471-1472(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HKU09-01 EMBL ADC87084.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001837 Genomic DNA. Translation: ADC87084.1.
RefSeqYP_003471211.1. NC_013893.1.

3D structure databases

ProteinModelPortalD3QIM1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC87084; ADC87084; SLGD_00946.
GeneID8818651.
KEGGslg:SLGD_00946.
PATRIC35305252. VBIStaLug155172_0930.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000031444.
KOK01775.
OMARDLELCS.

Enzyme and pathway databases

BioCycSLUG698737:GHG4-945-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3QIM1_STALH
AccessionPrimary (citable) accession number: D3QIM1
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: February 19, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)