D3QIM1 (D3QIM1_STALH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Ordered Locus Names:

SLGD_00946

Organism

Staphylococcus lugdunensis (strain HKU09-01) [Complete proteome] [HAMAP] EMBL ADC87084.1

Taxonomic identifier

698737 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Staphylococcaceae › Staphylococcus › Staphylococcus lugdunensis

Protein attributes

Sequence length	382 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622 RuleBase RU004247
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL ADC87084.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3QIM1 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: 89F3BF757B662D47	FASTA	382	43,106
	10 20 30 40 50 60 MSDKYYRNTY INVDLAAINN NYRQFTQLHD NKTVIPVIKA NGYGLGSVRI AQYLVDHGAS 70 80 90 100 110 120 FFAVATLDEA IELRMHGIKA QILILGVIPI EDINKAIQHR VAITVPSKSW LSSAIKAIND 130 140 150 160 170 180 DNEKRLWLHI KLDTGMGRLG IKNQAEYHQT IHLIEQHEHL VFEGVYTHFA CADEPGDSAQ 190 200 210 220 230 240 QQYQCFKTWV TSTDMPRYVH AQNSAGALMI DADICNAVRL GISLYGYYPS EYVKEEADIE 250 260 270 280 290 300 LQPSAELMTQ IVQTKELQPG ESVSYGSTYT AQSPIKIGII PIGYADGYLR IMQGHFVNVK 310 320 330 340 350 360 GQQCEVIGRV CMDQTIIKIN DDILEGDEVC VISKQQDSIQ SVDAIAKQQK TINYEVLCNL 370 380 GRRLPRIYKF DNKEYIINDL LK

References

[1]	"Complete genome sequence of Staphylococcus lugdunensis strain HKU09-01." Tse H., Tsoi H.W., Leung S.P., Lau S.K., Woo P.C., Yuen K.Y. J. Bacteriol. 192:1471-1472(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HKU09-01.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001837 Genomic DNA. Translation: ADC87084.1.
RefSeq	YP_003471211.1. NC_013893.1.
3D structure databases
ProteinModelPortal	D3QIM1.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADC87084; ADC87084; SLGD_00946.
GeneID	8818651.
KEGG	slg:SLGD_00946.
PATRIC	35305252. VBIStaLug155172_0930.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
OMA	PRIPRRY.
Enzyme and pathway databases
BioCyc	SLUG698737:GHG4-945-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D3QIM1_STALH

Accession

Primary (citable) accession number: D3QIM1

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)