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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Snas_2815

Organism
Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciSNAS446470:GHHC-2840-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Snas_2815Imported
OrganismiStackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)Imported
Taxonomic identifieri446470 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaGlycomycetalesGlycomycetaceaeStackebrandtia
Proteomesi
  • UP000000844 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi446470.Snas_2815.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4107TMI. Bacteria.
COG3285. LUCA.
HOGENOMiHOG000244654.
KOiK01971.
OMAiCVKTSGS.
OrthoDBiPOG091H0AZ9.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

D3Q8B7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPVSQRVRF GDRELTVSHL DKLMYPETGT TKADVIDYYA RAAAVLLPHI
60 70 80 90 100
TGRILTRVRY PHGTGDVRFF EKHAPPAVPP WLRTATVPSK THADGVTYVV
110 120 130 140 150
ADEPAALVWL ANLYTIELHT PQWQLDDTAP DSTRRPDRLV IDLDPGEGAG
160 170 180 190 200
ITECVHIAHL VRERLEADGL IAYPKTSGKN GVHLVVPISG TQPAEQVIDY
210 220 230 240 250
AKALARSLAA AHPRLVTATM GPRNRIGKVL IDWSQNNPAK TTVAAYSLRG
260 270 280 290 300
QPRPVISTPI TWSELDAGNT GPFGPEAVLG RVATLGDLHA DVTTPGPPLP

VAAGR
Length:305
Mass (Da):32,924
Last modified:April 20, 2010 - v1
Checksum:iD59C252AE89F5959
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001778 Genomic DNA. Translation: ADD42491.1.
RefSeqiWP_013018062.1. NC_013947.1.

Genome annotation databases

EnsemblBacteriaiADD42491; ADD42491; Snas_2815.
KEGGisna:Snas_2815.
PATRICi35367927. VBIStaNas43420_2775.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001778 Genomic DNA. Translation: ADD42491.1.
RefSeqiWP_013018062.1. NC_013947.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi446470.Snas_2815.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADD42491; ADD42491; Snas_2815.
KEGGisna:Snas_2815.
PATRICi35367927. VBIStaNas43420_2775.

Phylogenomic databases

eggNOGiENOG4107TMI. Bacteria.
COG3285. LUCA.
HOGENOMiHOG000244654.
KOiK01971.
OMAiCVKTSGS.
OrthoDBiPOG091H0AZ9.

Enzyme and pathway databases

BioCyciSNAS446470:GHHC-2840-MONOMER.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD3Q8B7_STANL
AccessioniPrimary (citable) accession number: D3Q8B7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 7, 2016
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.