D3Q8B6 (D3Q8B6_STANL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADD42490.1

Gene names

Ordered Locus Names:

Snas_2814

Organism

Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) [Complete proteome] [HAMAP]

Taxonomic identifier

446470 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Glycomycineae › Glycomycetaceae › Stackebrandtia › Stackebrandtia nassauensis

Protein attributes

Sequence length	358 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADD42490.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3Q8B6 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: 77E5A3A3F7237275	FASTA	358	37,936
	10 20 30 40 50 60 MLPTPGTLPE GPGWGFEFKW DGMRTLIATA DGRARMIARG GGDYASAFPD LADIADQLPE 70 80 90 100 110 120 GVIDAEIIAL DASARPSFSR VAKRFSNRHP PPDLVRSVPV NLMIFDLLRL GDAEVVGQPY 130 140 150 160 170 180 WRRREVLDAL ELVGERWLVP PWHDDGAGTL AAALDAGLEG VVAKRLDSRY VAGRSRDWVK 190 200 210 220 230 240 VKAVDTGDVV VGGWRTAIRS LLVGTPNAAG TLTYRGRVGS GLTDAELGRF RAELAPSDAC 250 260 270 280 290 300 PFDPPPPGDH ARDAIWTAPV AVVEVAFSHL TRSGLMRHPR YVRARPDKTA ADIDPAAMDP 310 320 330 340 350 GASDSGPIDP RAIDPGASDS STIAPAAIDR SSTDAIASDP DAIGSGLIEP DGDETGES

References

[1]

"Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21)." Munk C., Lapidus A., Copeland A., Jando M., Mayilraj S., Glavina Del Rio T., Nolan M., Chen F., Lucas S., Tice H., Cheng J.F., Han C., Detter J.C., Bruce D., Goodwin L., Chain P., Pitluck S., Goker M. , Ovchinnikova G., Pati A., Ivanova N., Mavromatis K., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P. Stand. Genomic Sci. 1:292-299(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001778 Genomic DNA. Translation: ADD42490.1.
RefSeq	YP_003511583.1. NC_013947.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADD42490; ADD42490; Snas_2814.
GeneID	8884012.
KEGG	sna:Snas_2814.
PATRIC	35367925. VBIStaNas43420_2774.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
OMA	VEVKYGQ.
Enzyme and pathway databases
BioCyc	SNAS446470:GHHC-2839-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D3Q8B6_STANL

Accession

Primary (citable) accession number: D3Q8B6

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)