SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

D3PQU4

- D3PQU4_MEIRD

UniProt

D3PQU4 - D3PQU4_MEIRD

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Ribosomal protein S12 methylthiotransferase RimO
Gene
rimO, Mrub_1063, K649_04960
Organism
Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) (Thermus ruber)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 By similarity.UniRule annotation

Cofactori

Binds 2 4Fe-4S clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi12 – 121Iron-sulfur (4Fe-4S) By similarityUniRule annotation
Metal bindingi48 – 481Iron-sulfur (4Fe-4S) By similarityUniRule annotation
Metal bindingi77 – 771Iron-sulfur (4Fe-4S) By similarityUniRule annotation
Metal bindingi143 – 1431Iron-sulfur (4Fe-4S-S-AdoMet) By similarityUniRule annotation
Metal bindingi147 – 1471Iron-sulfur (4Fe-4S-S-AdoMet) By similarityUniRule annotation
Metal bindingi150 – 1501Iron-sulfur (4Fe-4S-S-AdoMet) By similarityUniRule annotation

GO - Molecular functioni

  1. 4 iron, 4 sulfur cluster binding Source: UniProtKB-HAMAP
  2. iron ion binding Source: UniProtKB-HAMAP
  3. transferase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. RNA modification Source: InterPro
  2. peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinImported, TransferaseUniRule annotationSAAS annotationsImported

Keywords - Ligandi

4Fe-4SUniRule annotationSAAS annotations, Iron, Iron-sulfur, Metal-binding, S-adenosyl-L-methionineUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciMRUB504728:GI6U-1086-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal protein S12 methylthiotransferase RimOUniRule annotation (EC:2.-.-.-UniRule annotation)
Short name:
S12 MTTaseUniRule annotation
Short name:
S12 methylthiotransferaseUniRule annotation
Alternative name(s):
Ribosome maturation factor RimO
Gene namesi
Name:rimOUniRule annotationImported
Ordered Locus Names:Mrub_1063Imported
ORF Names:K649_04960Imported
OrganismiMeiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) (Thermus ruber)Imported
Taxonomic identifieri504728 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeMeiothermus
ProteomesiUP000006655: Chromosome, UP000013026: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 113111MTTase N-terminal By similarityUniRule annotation
Add
BLAST
Domaini369 – 43769TRAM By similarityUniRule annotation
Add
BLAST

Sequence similaritiesi

Contains 1 MTTase N-terminal domain.UniRule annotation
Contains 1 TRAM domain.UniRule annotation
Contains MTTase N-terminal domain.SAAS annotations
Contains TRAM domain.SAAS annotations

Phylogenomic databases

HOGENOMiHOG000224766.
KOiK14441.
OMAiERYHRFM.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.80.30.20. 1 hit.
HAMAPiMF_01865. MTTase_RimO.
InterProiIPR006638. Elp3/MiaB/NifB.
IPR023970. MeThioTfrase/rSAM.
IPR005839. Methylthiotransferase.
IPR020612. Methylthiotransferase_CS.
IPR013848. Methylthiotransferase_N.
IPR012340. NA-bd_OB-fold.
IPR005840. Ribosomal_S12_MeSTrfase_RimO.
IPR007197. rSAM.
IPR023404. rSAM_horseshoe.
IPR002792. TRAM_dom.
[Graphical view]
PANTHERiPTHR11918. PTHR11918. 1 hit.
PfamiPF04055. Radical_SAM. 1 hit.
PF01938. TRAM. 1 hit.
PF00919. UPF0004. 1 hit.
[Graphical view]
SMARTiSM00729. Elp3. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00089. TIGR00089. 1 hit.
TIGR01125. TIGR01125. 1 hit.
PROSITEiPS51449. MTTASE_N. 1 hit.
PS01278. MTTASE_RADICAL. 1 hit.
PS50926. TRAM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3PQU4-1 [UniParc]FASTAAdd to Basket

« Hide

MAGKVGFVSL GCPKALVDSE QILSRLRAQG YETSPTYQEA DVVVVNTCGF    50
ITPAVEESLT AIGEALSENG KVIVTGCLGA RPEVIQQAHP QVLEVTGPGE 100
VDRVLAAVQR VVPLEQNPFT ALVPPQVKLT PRHYAYLKIA EGCNHKCSFC 150
IIPKLRGLQQ SRDAAEILFE ATRLVGTGTK ELLVIAQDTS AYGVDIRHRT 200
SDYAGKQVRA HLVDLVNELA GLGAWLRLHY VYPYPHVRDL IPLMAEGKLL 250
PYLDVPLQHA SPRVLRAMRR PGGAESHLKT IQEWRAIAPD LAIRSSFIVG 300
FPGETEEDFE LLLDFIAEAR LDRVGCFTYS EVEGADANSL PGAVPQEVKE 350
ERRARLMALQ QQISLEKNQA RLGQTLEVIV DDYGELPGLV VGRSRYDAPG 400
IDGLVYAETD GTVKIGDIIQ VRITQAEAYD LHGEMVGRVA WKPAVPVIKN 450
VATETIQV 458
Length:458
Mass (Da):50,106
Last modified:April 20, 2010 - v1
Checksum:iB5CBD124ED5BC1F9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001743 Genomic DNA. Translation: ADD27827.1.
CP005385 Genomic DNA. Translation: AGK04294.1.
RefSeqiYP_003506847.1. NC_013946.1.
YP_007879791.1. NC_021081.1.

Genome annotation databases

EnsemblBacteriaiADD27827; ADD27827; Mrub_1063.
AGK04294; AGK04294; K649_04960.
GeneIDi15335604.
8879152.
KEGGimrb:Mrub_1063.
mre:K649_04960.
PATRICi35358266. VBIMeiRub128672_1069.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001743 Genomic DNA. Translation: ADD27827.1 .
CP005385 Genomic DNA. Translation: AGK04294.1 .
RefSeqi YP_003506847.1. NC_013946.1.
YP_007879791.1. NC_021081.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADD27827 ; ADD27827 ; Mrub_1063 .
AGK04294 ; AGK04294 ; K649_04960 .
GeneIDi 15335604.
8879152.
KEGGi mrb:Mrub_1063.
mre:K649_04960.
PATRICi 35358266. VBIMeiRub128672_1069.

Phylogenomic databases

HOGENOMi HOG000224766.
KOi K14441.
OMAi ERYHRFM.

Enzyme and pathway databases

BioCyci MRUB504728:GI6U-1086-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.80.30.20. 1 hit.
HAMAPi MF_01865. MTTase_RimO.
InterProi IPR006638. Elp3/MiaB/NifB.
IPR023970. MeThioTfrase/rSAM.
IPR005839. Methylthiotransferase.
IPR020612. Methylthiotransferase_CS.
IPR013848. Methylthiotransferase_N.
IPR012340. NA-bd_OB-fold.
IPR005840. Ribosomal_S12_MeSTrfase_RimO.
IPR007197. rSAM.
IPR023404. rSAM_horseshoe.
IPR002792. TRAM_dom.
[Graphical view ]
PANTHERi PTHR11918. PTHR11918. 1 hit.
Pfami PF04055. Radical_SAM. 1 hit.
PF01938. TRAM. 1 hit.
PF00919. UPF0004. 1 hit.
[Graphical view ]
SMARTi SM00729. Elp3. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00089. TIGR00089. 1 hit.
TIGR01125. TIGR01125. 1 hit.
PROSITEi PS51449. MTTASE_N. 1 hit.
PS01278. MTTASE_RADICAL. 1 hit.
PS50926. TRAM. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35948 / DSM 1279 / VKM B-1258 / 21.
  2. "Non-Hybrid, Finished Microbial Genome Assemblies from Long-Read SMRT Sequencing Data."
    Klammer A., Drake J., Heiner C., Clum A., Copeland A., Huddleston J., Eichler E., Turner S.W.
    Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DSM 1279Imported.
  3. Chin J., Alexander D.H., Marks P., Korlach J., Clum A., Copeland A.
    Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DSM 1279Imported.

Entry informationi

Entry nameiD3PQU4_MEIRD
AccessioniPrimary (citable) accession number: D3PQU4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi