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D3PQ41 (D3PQ41_MEIRD) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=4.1.1.39 EMBL ADD27667.1
Gene names
Ordered Locus Names:Mrub_0902 EMBL ADD27667.1
ORF Names:K649_04150 EMBL AGK04132.1
OrganismMeiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) (Thermus ruber) [Complete proteome] [HAMAP] EMBL ADD27667.1
Taxonomic identifier504728 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeMeiothermus

Protein attributes

Sequence length365 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ADD27667.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3PQ41 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 9CD688C20D454FAC

FASTA36539,307
        10         20         30         40         50         60 
MYELEATYRI QSTPEKIEAR AQALAIEQSI EMPPTAVRQP ELLQKVLAQV DSIQEAGAGY 

        70         80         90        100        110        120 
FRVVLRFAEQ TTAFETTGLL NVLFGNCALQ EDVELLDLKL PPSLLSLFAG PRFGIAGLRQ 

       130        140        150        160        170        180 
LAQVEGRPLT CTALKPQGLS PTQLAELAYT FALGGIDIVK DDHGLTNQPT APFAERVPVI 

       190        200        210        220        230        240 
QEAIARANAE TGGHTLYAPM LTGGPKTLHR HLRIARQAGV KVILTAPMLL GLATFQELVE 

       250        260        270        280        290        300 
DLGLAVLAHP AFAGLRISPP LMFGKLFRLL GADAVIFPNH GGRFAYSPQT CLALAQAARA 

       310        320        330        340        350        360 
PWGHIRPALP VPAGGMTVER VEEMLGLYGL ETMLLIGGDL LAAKDNLLER TRQFVQKVAV 


STGKV 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Meiothermus ruber type strain (21)."
Tindall B.J., Sikorski J., Lucas S., Goltsman E., Copeland A., Glavina Del Rio T., Nolan M., Tice H., Cheng J.F., Han C., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Ovchinnikova G., Pati A., Fahnrich R., Goodwin L. expand/collapse author list , Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Rohde M., Goker M., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Lapidus A.
Stand. Genomic Sci. 3:26-36(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 35948 / DSM 1279 / VKM B-1258 / 21.
[2]"Non-Hybrid, Finished Microbial Genome Assemblies from Long-Read SMRT Sequencing Data."
Klammer A., Drake J., Heiner C., Clum A., Copeland A., Huddleston J., Eichler E., Turner S.W.
Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 1279 EMBL AGK04132.1.
[3]Chin J., Alexander D.H., Marks P., Korlach J., Clum A., Copeland A.
Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 1279 EMBL AGK04132.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001743 Genomic DNA. Translation: ADD27667.1.
CP005385 Genomic DNA. Translation: AGK04132.1.
RefSeqYP_003506687.1. NC_013946.1.
YP_007879629.1. NC_021081.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADD27667; ADD27667; Mrub_0902.
AGK04132; AGK04132; K649_04150.
GeneID15335442.
8878986.
KEGGmrb:Mrub_0902.
mre:K649_04150.
PATRIC35357930. VBIMeiRub128672_0906.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000230274.
KOK01601.
OMAPIFAHPA.

Enzyme and pathway databases

BioCycMRUB504728:GI6U-920-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
InterProIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3PQ41_MEIRD
AccessionPrimary (citable) accession number: D3PQ41
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: January 22, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)