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D3PMS9 (D3PMS9_MEIRD) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Uncharacterized protein EMBL AGK03706.1
Gene names
Ordered Locus Names:Mrub_0477 EMBL ADD27254.1
ORF Names:K649_02010 EMBL AGK03706.1
OrganismMeiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) (Thermus ruber) [Complete proteome] [HAMAP] EMBL ADD27254.1
Taxonomic identifier504728 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeMeiothermus

Protein attributes

Sequence length431 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the 2-oxoacid dehydrogenase family. RuleBase RU003423

Ontologies

Keywords
   DomainLipoyl RuleBase RU003765
   Molecular functionAcyltransferase RuleBase RU003765
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functiontransferase activity, transferring acyl groups

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3PMS9 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 3C4B8E18A02A81C0

FASTA43145,638
        10         20         30         40         50         60 
MAELKLPDLG DNVTSAVVVG VLIKEGDTIA AGQPVLELET DKAVMEAPAS EGGTVSKVLV 

        70         80         90        100        110        120 
KPGDEVKSGQ VIAVLGDAAP SAEKQEPKEK QEPKEEKAAP APAPTPAPAA TPSAPAAAPR 

       130        140        150        160        170        180 
PPASAAPAGQ RRLIPAAPSV RRLAREMGIN LMEVVGSGPA YRISENDLKR FAAGEAPTTA 

       190        200        210        220        230        240 
APQPSSAPAL PDFSKFGPVR REAMSGVRRA TVRSMAQAWS TIPMVTHFDR ADITEMEALR 

       250        260        270        280        290        300 
KRMAPRAEQR GAKVTMTAIL LKIAAAALKQ FPKFNASIDT ASNEIIYKDY IHIGVAVDTP 

       310        320        330        340        350        360 
TGLLVPVVRD VDKKGVIALA KELGEIAAKA RERKLTPEEM QGATFTISNL GGIGGTGFTP 

       370        380        390        400        410        420 
IVNWPEVAIM GVSRSSMEPV WSAEKGVFEP RNIMPFSLSY DHRLIDGADA ARFCRFVAEL 

       430 
LEDPFLLGFE G 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Meiothermus ruber type strain (21)."
Tindall B.J., Sikorski J., Lucas S., Goltsman E., Copeland A., Glavina Del Rio T., Nolan M., Tice H., Cheng J.F., Han C., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Ovchinnikova G., Pati A., Fahnrich R., Goodwin L. expand/collapse author list , Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Rohde M., Goker M., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Lapidus A.
Stand. Genomic Sci. 3:26-36(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 35948 / DSM 1279 / VKM B-1258 / 21.
[2]"Non-Hybrid, Finished Microbial Genome Assemblies from Long-Read SMRT Sequencing Data."
Klammer A., Drake J., Heiner C., Clum A., Copeland A., Huddleston J., Eichler E., Turner S.W.
Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 1279 EMBL AGK03706.1.
[3]Chin J., Alexander D.H., Marks P., Korlach J., Clum A., Copeland A.
Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 1279 EMBL AGK03706.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001743 Genomic DNA. Translation: ADD27254.1.
CP005385 Genomic DNA. Translation: AGK03706.1.
RefSeqYP_003506274.1. NC_013946.1.
YP_007879203.1. NC_021081.1.

3D structure databases

ProteinModelPortalD3PMS9.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADD27254; ADD27254; Mrub_0477.
AGK03706; AGK03706; K649_02010.
GeneID15335016.
8878552.
KEGGmrb:Mrub_0477.
mre:K649_02010.
PATRIC35357062. VBIMeiRub128672_0481.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000281562.
KOK00627.
OMAFWHVSEG.

Enzyme and pathway databases

BioCycMRUB504728:GI6U-486-MONOMER.

Family and domain databases

Gene3D3.30.559.10. 1 hit.
4.10.320.10. 1 hit.
InterProIPR001078. 2-oxoacid_DH_actylTfrase.
IPR000089. Biotin_lipoyl.
IPR023213. CAT-like_dom.
IPR004167. E3-bd.
IPR011053. Single_hybrid_motif.
[Graphical view]
PfamPF00198. 2-oxoacid_dh. 1 hit.
PF00364. Biotin_lipoyl. 1 hit.
PF02817. E3_binding. 1 hit.
[Graphical view]
SUPFAMSSF47005. SSF47005. 1 hit.
SSF51230. SSF51230. 1 hit.
PROSITEPS50968. BIOTINYL_LIPOYL. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3PMS9_MEIRD
AccessionPrimary (citable) accession number: D3PMS9
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: June 11, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)