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D3P8H3 (D3P8H3_DEFDS) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histidine--tRNA ligase HAMAP-Rule MF_00127
EC=6.1.1.21 HAMAP-Rule MF_00127
Alternative name(s):
Histidyl-tRNA synthetase HAMAP-Rule MF_00127
Gene names
Name:hisS HAMAP-Rule MF_00127 EMBL BAI81013.1
Ordered Locus Names:DEFDS_1553 EMBL BAI81013.1
OrganismDeferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) [Complete proteome] [HAMAP] EMBL BAI81013.1
Taxonomic identifier639282 [NCBI]
Taxonomic lineageBacteria › Deferribacteres › Deferribacterales › Deferribacteraceae › Deferribacter ›

Protein attributes

Sequence length415 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His). HAMAP-Rule MF_00127 SAAS SAAS015807

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00127

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00127.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. HAMAP-Rule MF_00127 RuleBase RU003746

Sequences

Sequence LengthMass (Da)Tools
D3P8H3 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 972268126311409E

FASTA41548,320
        10         20         30         40         50         60 
MFKKVKGFRD IFGDDIRYWH LIEDSFKKLF PTFGYEEIKL PILEKTELFV RGIGDTTDIV 

        70         80         90        100        110        120 
EKEMFTFKDR DGSYLSLRPE GTASVVRAFI ENKLYEPPAI RKYYYYGPMF RRERPQKGRF 

       130        140        150        160        170        180 
RQFYQIGIEA FGSESPLLDA EIIFLLYKFL NDFDLKDFLR MEINSIGCPE CRPKYRDKLI 

       190        200        210        220        230        240 
QYFKNNYEDL CEDCKRRLEK NPLRILDCKV ESCKVIVKDA PIILDNLCDV CDNHFRKLKS 

       250        260        270        280        290        300 
YLNQFGVEYN VNPYIVRGLD YYVRTAFEMV TDKLGASSAV GAGGRYDGLI KELGGPDIPG 

       310        320        330        340        350        360 
IGFAIGVDRL VELIKMKNEL KKDEVDIYII TFEEFTEVGI NISNELRDAG FKVNLGYDLG 

       370        380        390        400        410 
SIKSEMKKAN RLNSRYVLII GEDEISSGKF TLKDMNSGEQ FKINRDEIIK FLQEN

« Hide

References

[1]"Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1."
Takaki Y., Shimamura S., Nakagawa S., Fukuhara Y., Horikawa H., Ankai A., Harada T., Hosoyama A., Oguchi A., Fukui S., Fujita N., Takami H., Takai K.
DNA Res. 17:123-137(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14783 / JCM 11476 / NBRC 101012 / SSM1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP011529 Genomic DNA. Translation: BAI81013.1.
RefSeqYP_003496769.1. NC_013939.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAI81013; BAI81013; DEFDS_1553.
GeneID8868147.
KEGGddf:DEFDS_1553.
PATRIC35337063. VBIDefDes107323_1553.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000018072.
KOK01892.
OMACGGGNFK.

Enzyme and pathway databases

BioCycDDES639282:GJ90-1543-MONOMER.

Family and domain databases

Gene3D3.40.50.800. 1 hit.
HAMAPMF_00127. His_tRNA_synth.
InterProIPR006195. aa-tRNA-synth_II.
IPR004154. Anticodon-bd.
IPR015807. His-tRNA-ligase.
IPR004516. HisRS/HisZ.
[Graphical view]
PANTHERPTHR11476. PTHR11476. 1 hit.
PfamPF03129. HGTP_anticodon. 1 hit.
[Graphical view]
PIRSFPIRSF001549. His-tRNA_synth. 1 hit.
SUPFAMSSF52954. Anticodon_bd. 1 hit.
TIGRFAMsTIGR00442. hisS. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3P8H3_DEFDS
AccessionPrimary (citable) accession number: D3P8H3
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 29, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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