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D3NRC1 (D3NRC1_AZOS1) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=6.5.1.1 EMBL BAI70950.1
Gene names
Name:lig EMBL BAI70950.1
Ordered Locus Names:AZL_003120 EMBL BAI70950.1
OrganismAzospirillum sp. (strain B510) [Complete proteome] [HAMAP] EMBL BAI70950.1
Taxonomic identifier137722 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeAzospirillum

Protein attributes

Sequence length533 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAI70950.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3NRC1 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: EE761D7E78080D6C

FASTA53359,307
        10         20         30         40         50         60 
MNRFAALIDA LVFMPSRSGK IRLLVDHFAS APDPERGWAL AALTGALSFR EAKPAAIREL 

        70         80         90        100        110        120 
AAARVDPVLL ALSYDYVGDL AETVALIWPE RPNPANSPPP GPSPGLDEVV EGLRAARRGQ 

       130        140        150        160        170        180 
VMGLVEGWLD TLDPSGRFAL LKLITGALRI GVSARLAKTA LAEWGRAARP EVGVDDVEEV 

       190        200        210        220        230        240 
WHGLTAPYPE LFAWLEGRAE RPATGAGAGF RPMMLSHPLE EEDRAGLDPA AYAAEWKWDG 

       250        260        270        280        290        300 
IRVQLVARGG ERRLYSRTGD DVSGAFPDIV DHMSFDAVLD GELLVARDGV VAPFNDLQQR 

       310        320        330        340        350        360 
LNRKSVTARM LRDGPAWVRL YDILFDGEED LRGLSFVERR ARLERWFETV RPRRMDLSPL 

       370        380        390        400        410        420 
VPFAGWDELA GLREGARENG IEGLMLKRRD SAYLAGRPKG PWFKWKRGAL TLDTVMMYAQ 

       430        440        450        460        470        480 
RGHGKRSSYY SDYTFGVWRG EELVPVGKAY SGFTDAELIE LDRWVRTHTT RRYGPVREVE 

       490        500        510        520        530 
AGLVLEVAFD SVHPSTRHKS GLAMRFPRIH RIRWDKPATE ADRLETLAAL VAG 

« Hide

References

[1]"Complete genomic structure of the cultivated rice endophyte Azospirillum sp. B510."
Kaneko T., Minamisawa K., Isawa T., Nakatsukasa H., Mitsui H., Kawaharada Y., Nakamura Y., Watanabe A., Kawashima K., Ono A., Shimizu Y., Takahashi C., Minami C., Fujishiro T., Kohara M., Katoh M., Nakazaki N., Nakayama S. expand/collapse author list , Yamada M., Tabata S., Sato S.
DNA Res. 17:37-50(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B510 EMBL BAI70950.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP010946 Genomic DNA. Translation: BAI70950.1.
RefSeqYP_003447494.1. NC_013854.1.

3D structure databases

ProteinModelPortalD3NRC1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAI70950; BAI70950; AZL_003120.
GeneID8788863.
KEGGazl:AZL_003120.
PATRIC31929381. VBIAzoSp82869_0341.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036007.
KOK01971.

Enzyme and pathway databases

BioCycASP137722:GBYD-317-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3NRC1_AZOS1
AccessionPrimary (citable) accession number: D3NRC1
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 16, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)