Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase (ATP)

Gene

lig

Organism
Azospirillum sp. (strain B510)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP137722:GBYD-317-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Name:ligImported
Ordered Locus Names:AZL_003120Imported
OrganismiAzospirillum sp. (strain B510)Imported
Taxonomic identifieri137722 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeAzospirillum
ProteomesiUP000002040: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD3NRC1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3NRC1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAALIDA LVFMPSRSGK IRLLVDHFAS APDPERGWAL AALTGALSFR
60 70 80 90 100
EAKPAAIREL AAARVDPVLL ALSYDYVGDL AETVALIWPE RPNPANSPPP
110 120 130 140 150
GPSPGLDEVV EGLRAARRGQ VMGLVEGWLD TLDPSGRFAL LKLITGALRI
160 170 180 190 200
GVSARLAKTA LAEWGRAARP EVGVDDVEEV WHGLTAPYPE LFAWLEGRAE
210 220 230 240 250
RPATGAGAGF RPMMLSHPLE EEDRAGLDPA AYAAEWKWDG IRVQLVARGG
260 270 280 290 300
ERRLYSRTGD DVSGAFPDIV DHMSFDAVLD GELLVARDGV VAPFNDLQQR
310 320 330 340 350
LNRKSVTARM LRDGPAWVRL YDILFDGEED LRGLSFVERR ARLERWFETV
360 370 380 390 400
RPRRMDLSPL VPFAGWDELA GLREGARENG IEGLMLKRRD SAYLAGRPKG
410 420 430 440 450
PWFKWKRGAL TLDTVMMYAQ RGHGKRSSYY SDYTFGVWRG EELVPVGKAY
460 470 480 490 500
SGFTDAELIE LDRWVRTHTT RRYGPVREVE AGLVLEVAFD SVHPSTRHKS
510 520 530
GLAMRFPRIH RIRWDKPATE ADRLETLAAL VAG
Length:533
Mass (Da):59,307
Last modified:April 20, 2010 - v1
Checksum:iEE761D7E78080D6C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010946 Genomic DNA. Translation: BAI70950.1.
RefSeqiYP_003447494.1. NC_013854.1.

Genome annotation databases

EnsemblBacteriaiBAI70950; BAI70950; AZL_003120.
GeneIDi8788863.
KEGGiazl:AZL_003120.
PATRICi31929381. VBIAzoSp82869_0341.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010946 Genomic DNA. Translation: BAI70950.1.
RefSeqiYP_003447494.1. NC_013854.1.

3D structure databases

ProteinModelPortaliD3NRC1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAI70950; BAI70950; AZL_003120.
GeneIDi8788863.
KEGGiazl:AZL_003120.
PATRICi31929381. VBIAzoSp82869_0341.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.

Enzyme and pathway databases

BioCyciASP137722:GBYD-317-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B510Imported.

Entry informationi

Entry nameiD3NRC1_AZOS1
AccessioniPrimary (citable) accession number: D3NRC1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 4, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.