D3HBA5 (D3HBA5_STRM6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Putative Holliday junction resolvase HAMAP-Rule MF_00651
EC=3.1.-.- HAMAP-Rule MF_00651

Gene names

Ordered Locus Names:

smi_1919

Organism

Streptococcus mitis (strain B6) [Complete proteome] [HAMAP]

Taxonomic identifier

365659 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Lactobacillales › Streptococcaceae › Streptococcus › Streptococcus mitis

Protein attributes

Sequence length	139 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Could be a nuclease that resolves Holliday junction intermediates in genetic recombination By similarity. HAMAP-Rule MF_00651 SAAS SAAS005227
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00651 SAAS SAAS005227.
Sequence similarities	Belongs to the YqgF HJR family. HAMAP-Rule MF_00651

Ontologies

Keywords
Biological process	DNA damage DNA recombination HAMAP-Rule MF_00651 SAAS SAAS005227 DNA repair HAMAP-Rule MF_00651 SAAS SAAS005227
Cellular component	Cytoplasm HAMAP-Rule MF_00651 SAAS SAAS005227
Molecular function	Hydrolase Nuclease HAMAP-Rule MF_00651 SAAS SAAS005227
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: HAMAP DNA repair Inferred from electronic annotation. Source: HAMAP nucleic acid phosphodiester bond hydrolysis Inferred from electronic annotation. Source: GOC
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	nuclease activity Inferred from electronic annotation. Source: UniProtKB-KW nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3HBA5 [UniParc]. Last modified March 23, 2010. Version 1. Checksum: A370485454980510	FASTA	139	15,651
	10 20 30 40 50 60 MRIMGLDVGS KTVGVAISDP LGFTAQGLEI IQINEEQGQF GFDRVKELVD TYKVERFVVG 70 80 90 100 110 120 LPKNMNNTSG PRVEASQAYG AKLEELFSLP VDYQDERLTT VAAERMLIEQ ADISRNKRKK 130 VIDKLAAQLI LQNYLDRKF

References

[1]

"The genome of Streptococcus mitis B6--what is a commensal?" Denapaite D., Bruckner R., Nuhn M., Reichmann P., Henrich B., Maurer P., Schahle Y., Selbmann P., Zimmermann W., Wambutt R., Hakenbeck R. PLoS ONE 5:E9426-E9426(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FN568063 Genomic DNA. Translation: CBJ23155.1.
RefSeq	YP_003447015.1. NC_013853.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBJ23155; CBJ23155; smi_1919.
GeneID	8798601.
KEGG	smb:smi_1919.
PATRIC	32456849. VBIStrMit3699_1934.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000016953.
KO	K07447.
OMA	KNMNGTV.
Family and domain databases
Gene3D	3.30.420.140. 1 hit.
HAMAP	MF_00651. HJR_YqgF.
InterPro	IPR005227. Resolv_Hlld_junc_YqgF-like. IPR012337. RNaseH-like_dom. IPR006641. YqgF/RNaseH-like_dom. [Graphical view]
Pfam	PF03652. UPF0081. 1 hit. [Graphical view]
SMART	SM00732. YqgFc. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
TIGRFAMs	TIGR00250. RNAse_H_YqgF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D3HBA5_STRM6

Accession

Primary (citable) accession number: D3HBA5

Entry history

Integrated into UniProtKB/TrEMBL:	March 23, 2010
Last sequence update:	March 23, 2010
Last modified:	May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)