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D3GRM6 (D3GRM6_ECO44) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.15 EMBL CBG34447.1
Gene names
Name:gadB EMBL CBG34447.1
Ordered Locus Names:EC042_1625 EMBL CBG34447.1
OrganismEscherichia coli O44:H18 (strain 042 / EAEC) [Complete proteome] [HAMAP] EMBL CBG34447.1
Taxonomic identifier216592 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length466 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
D3GRM6 [UniParc].

Last modified March 23, 2010. Version 1.
Checksum: 17DD0BA6E4064ED0

FASTA46652,653
        10         20         30         40         50         60 
MDKKLVTDLR SELLDSRFGA KSISTIAESK RFPLHEMRDD VAFQIINDEL YLDGNARQNL 

        70         80         90        100        110        120 
ATFCQTWDDE NVHKLMDLSI NKNWIDKEEY PQSAAIDLRC VNMVADLWHA PAPKNGQAVG 

       130        140        150        160        170        180 
TNTIGSSEAC MLGGMAMKWR WRKRMEAAGK PTDKPNLVCG PVQICWHKFA RYWDVELREI 

       190        200        210        220        230        240 
PMRPGQLFMD PKRMIEACDE NTIGVVPTFG VTYTGNYEFP QPLHDALDKF QADTGIDIDM 

       250        260        270        280        290        300 
HIDAASGGFL APFVAPDIVW DFRLPRVKSI SASGHKFGLA PLGCGWVIWR DEEALPQELV 

       310        320        330        340        350        360 
FNVDYLGGQI GTFAINFSRP AGQVIAQYYE FLRLGREGYT KVQNASYQVA AYLADEIAKL 

       370        380        390        400        410        420 
GPYEFICTGR PDEGIPAVCF KLKDGEDPGY TLYDLSERLR LRGWQVPAFT LGGEATDIVV 

       430        440        450        460 
MRIMCRRGFE MDFAELLLED YKASLKYLSD HPKLQGIAQQ NSFKHT 

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References

[1]"Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042."
Chaudhuri R.R., Sebaihia M., Hobman J.L., Webber M.A., Leyton D.L., Goldberg M.D., Cunningham A.F., Scott-Tucker A., Ferguson P.R., Thomas C.M., Frankel G., Tang C.M., Dudley E.G., Roberts I.S., Rasko D.A., Pallen M.J., Parkhill J., Nataro J.P., Thomson N.R., Henderson I.R.
PLoS ONE 5:E8801-E8801(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 042 / EAEC.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN554766 Genomic DNA. Translation: CBG34447.1.
RefSeqYP_006095935.1. NC_017626.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID12887200.
KEGGelo:EC042_1625.
PATRIC36684681. VBIEscCol52250_1682.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01580.
OMAIMENCHE.

Enzyme and pathway databases

BioCycECOL216592:GCV7-1636-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR021115. Pyridoxal-P_BS.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
PROSITEPS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3GRM6_ECO44
AccessionPrimary (citable) accession number: D3GRM6
Entry history
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: December 11, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)