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D3FVT4 (D3FVT4_BACPE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:liaR EMBL ADC50366.1
Ordered Locus Names:BpOF4_11565 EMBL ADC50366.1
OrganismBacillus pseudofirmus (strain OF4) [Complete proteome] [HAMAP] EMBL ADC50366.1
Taxonomic identifier398511 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length214 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707

Contains HTH luxR-type DNA-binding domain. SAAS SAAS016032

Contains response regulatory domain. SAAS SAAS016032

Sequences

Sequence LengthMass (Da)Tools
D3FVT4 [UniParc].

Last modified March 23, 2010. Version 1.
Checksum: 26DA9FECBE6E1752

FASTA21423,777
        10         20         30         40         50         60 
MGNNLVKVLL VDDHEMVRMG MSAFLQTQPD IEVIGQASNG LEGVEMTKRL EPDVIVMDLV 

        70         80         90        100        110        120 
MEKMDGIEAT RAIMKDKPLS KVIVLTSFID DEKVYPVIEA GAFSYLLKTS SAKEIAQAIR 

       130        140        150        160        170        180 
QAADGEPVLA SKVTNKMMNH MRSQKEKALH EELTPRELEV LKLIGVGQSN QEIAESLFIG 

       190        200        210 
IKTVKTHVSN ILQKLALEDR TQIAIYAHRH GLVK 

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References

[1]"Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4."
Janto B., Ahmed A., Ito M., Liu J., Hicks D.B., Pagni S., Fackelmayer O.J., Smith T.A., Earl J., Elbourne L.D., Hassan K., Paulsen I.T., Kolsto A.B., Tourasse N.J., Ehrlich G.D., Boissy R., Ivey D.M., Li G. expand/collapse author list , Xue Y., Ma Y., Hu F.Z., Krulwich T.A.
Environ. Microbiol. 13:3289-3309(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OF4 EMBL ADC50366.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001878 Genomic DNA. Translation: ADC50366.1.
RefSeqYP_003427258.1. NC_013791.2.

3D structure databases

ProteinModelPortalD3FVT4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADC50366; ADC50366; BpOF4_11565.
GeneID8767361.
KEGGbpf:BpOF4_11565.
PATRIC31947166. VBIBacPse80461_2253.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000034813.
KOK11618.

Enzyme and pathway databases

BioCycBPSE398511:GJI9-782-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSPR00038. HTHLUXR.
SMARTSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3FVT4_BACPE
AccessionPrimary (citable) accession number: D3FVT4
Entry history
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: April 16, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)