D3FVT4 (D3FVT4_BACPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
LiaR two-component response regulator EMBL ADC50366.1

Gene names

Name:	liaR EMBL ADC50366.1
Ordered Locus Names:	BpOF4_11565 EMBL ADC50366.1

Organism

Bacillus pseudofirmus (strain OF4) [Complete proteome] [HAMAP] EMBL ADC50366.1

Taxonomic identifier

398511 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus pseudofirmus

Protein attributes

Sequence length	214 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707 SAAS SAAS000792 Contains 1 response regulatory domain. SAAS SAAS000792

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000707 SAAS SAAS000792
Ligand	DNA-binding RuleBase RU000707 SAAS SAAS000792
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	intracellular signal transduction Inferred from electronic annotation. Source: GOC transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	phosphorelay response regulator activity Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3FVT4 [UniParc]. Last modified March 23, 2010. Version 1. Checksum: 26DA9FECBE6E1752	FASTA	214	23,777
	10 20 30 40 50 60 MGNNLVKVLL VDDHEMVRMG MSAFLQTQPD IEVIGQASNG LEGVEMTKRL EPDVIVMDLV 70 80 90 100 110 120 MEKMDGIEAT RAIMKDKPLS KVIVLTSFID DEKVYPVIEA GAFSYLLKTS SAKEIAQAIR 130 140 150 160 170 180 QAADGEPVLA SKVTNKMMNH MRSQKEKALH EELTPRELEV LKLIGVGQSN QEIAESLFIG 190 200 210 IKTVKTHVSN ILQKLALEDR TQIAIYAHRH GLVK

References

[1]

"Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4." Janto B., Ahmed A., Ito M., Liu J., Hicks D.B., Pagni S., Fackelmayer O.J., Smith T.A., Earl J., Elbourne L.D., Hassan K., Paulsen I.T., Kolsto A.B., Tourasse N.J., Ehrlich G.D., Boissy R., Ivey D.M., Li G. , Xue Y., Ma Y., Hu F.Z., Krulwich T.A. Environ. Microbiol. 13:3289-3309(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: OF4 EMBL ADC50366.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001878 Genomic DNA. Translation: ADC50366.1.
RefSeq	YP_003427258.1. NC_013791.2.
3D structure databases
ProteinModelPortal	D3FVT4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADC50366; ADC50366; BpOF4_11565.
GeneID	8767361.
KEGG	bpf:BpOF4_11565.
PATRIC	31947166. VBIBacPse80461_2253.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000034813.
KO	K11618.
Enzyme and pathway databases
BioCyc	BPSE398511:GJI9-782-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR011006. CheY-like_superfamily. IPR016032. Sig_transdc_resp-reg_C-effctor. IPR001789. Sig_transdc_resp-reg_receiver. IPR000792. Tscrpt_reg_LuxR_C. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00196. GerE. 1 hit. PF00072. Response_reg. 1 hit. [Graphical view]
PRINTS	PR00038. HTHLUXR.
SMART	SM00421. HTH_LUXR. 1 hit. SM00448. REC. 1 hit. [Graphical view]
SUPFAM	SSF46894. Bipartite_resp_reg_C-effector. 1 hit. SSF52172. CheY_like. 1 hit.
PROSITE	PS00622. HTH_LUXR_1. 1 hit. PS50043. HTH_LUXR_2. 1 hit. PS50110. RESPONSE_REGULATORY. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D3FVT4_BACPE

Accession

Primary (citable) accession number: D3FVT4

Entry history

Integrated into UniProtKB/TrEMBL:	March 23, 2010
Last sequence update:	March 23, 2010
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)