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D3FVT4

- D3FVT4_BACPE

UniProt

D3FVT4 - D3FVT4_BACPE

Protein
Submitted name:

LiaR two-component response regulator

Gene

liaR

Organism
Bacillus pseudofirmus (strain OF4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (23 Mar 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. phosphorelay response regulator activity Source: InterPro
    3. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotationSAAS annotation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciBPSE398511:GJI9-782-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    LiaR two-component response regulatorImported
    Gene namesi
    Name:liaRImported
    Ordered Locus Names:BpOF4_11565Imported
    OrganismiBacillus pseudofirmus (strain OF4)Imported
    Taxonomic identifieri398511 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001544: Chromosome

    PTM / Processingi

    Keywords - PTMi

    PhosphoproteinSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliD3FVT4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation
    Contains HTH luxR-type DNA-binding domain.SAAS annotation
    Contains response regulatory domain.SAAS annotation

    Phylogenomic databases

    HOGENOMiHOG000034813.
    KOiK11618.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR011006. CheY-like_superfamily.
    IPR016032. Sig_transdc_resp-reg_C-effctor.
    IPR001789. Sig_transdc_resp-reg_receiver.
    IPR000792. Tscrpt_reg_LuxR_C.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00196. GerE. 1 hit.
    PF00072. Response_reg. 1 hit.
    [Graphical view]
    PRINTSiPR00038. HTHLUXR.
    SMARTiSM00421. HTH_LUXR. 1 hit.
    SM00448. REC. 1 hit.
    [Graphical view]
    SUPFAMiSSF46894. SSF46894. 1 hit.
    SSF52172. SSF52172. 1 hit.
    PROSITEiPS00622. HTH_LUXR_1. 1 hit.
    PS50043. HTH_LUXR_2. 1 hit.
    PS50110. RESPONSE_REGULATORY. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3FVT4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGNNLVKVLL VDDHEMVRMG MSAFLQTQPD IEVIGQASNG LEGVEMTKRL    50
    EPDVIVMDLV MEKMDGIEAT RAIMKDKPLS KVIVLTSFID DEKVYPVIEA 100
    GAFSYLLKTS SAKEIAQAIR QAADGEPVLA SKVTNKMMNH MRSQKEKALH 150
    EELTPRELEV LKLIGVGQSN QEIAESLFIG IKTVKTHVSN ILQKLALEDR 200
    TQIAIYAHRH GLVK 214
    Length:214
    Mass (Da):23,777
    Last modified:March 23, 2010 - v1
    Checksum:i26DA9FECBE6E1752
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001878 Genomic DNA. Translation: ADC50366.1.
    RefSeqiYP_003427258.1. NC_013791.2.

    Genome annotation databases

    EnsemblBacteriaiADC50366; ADC50366; BpOF4_11565.
    GeneIDi8767361.
    KEGGibpf:BpOF4_11565.
    PATRICi31947166. VBIBacPse80461_2253.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001878 Genomic DNA. Translation: ADC50366.1 .
    RefSeqi YP_003427258.1. NC_013791.2.

    3D structure databases

    ProteinModelPortali D3FVT4.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADC50366 ; ADC50366 ; BpOF4_11565 .
    GeneIDi 8767361.
    KEGGi bpf:BpOF4_11565.
    PATRICi 31947166. VBIBacPse80461_2253.

    Phylogenomic databases

    HOGENOMi HOG000034813.
    KOi K11618.

    Enzyme and pathway databases

    BioCyci BPSE398511:GJI9-782-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR011006. CheY-like_superfamily.
    IPR016032. Sig_transdc_resp-reg_C-effctor.
    IPR001789. Sig_transdc_resp-reg_receiver.
    IPR000792. Tscrpt_reg_LuxR_C.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00196. GerE. 1 hit.
    PF00072. Response_reg. 1 hit.
    [Graphical view ]
    PRINTSi PR00038. HTHLUXR.
    SMARTi SM00421. HTH_LUXR. 1 hit.
    SM00448. REC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46894. SSF46894. 1 hit.
    SSF52172. SSF52172. 1 hit.
    PROSITEi PS00622. HTH_LUXR_1. 1 hit.
    PS50043. HTH_LUXR_2. 1 hit.
    PS50110. RESPONSE_REGULATORY. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4."
      Janto B., Ahmed A., Ito M., Liu J., Hicks D.B., Pagni S., Fackelmayer O.J., Smith T.A., Earl J., Elbourne L.D., Hassan K., Paulsen I.T., Kolsto A.B., Tourasse N.J., Ehrlich G.D., Boissy R., Ivey D.M., Li G.
      , Xue Y., Ma Y., Hu F.Z., Krulwich T.A.
      Environ. Microbiol. 13:3289-3309(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: OF4Imported.

    Entry informationi

    Entry nameiD3FVT4_BACPE
    AccessioniPrimary (citable) accession number: D3FVT4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 23, 2010
    Last sequence update: March 23, 2010
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3