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D3FVT4

- D3FVT4_BACPE

UniProt

D3FVT4 - D3FVT4_BACPE

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Protein
Submitted name:

LiaR two-component response regulator

Gene

liaR

Organism
Bacillus pseudofirmus (strain OF4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. phosphorelay signal transduction system Source: InterPro
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciBPSE398511:GJI9-782-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LiaR two-component response regulatorImported
Gene namesi
Name:liaRImported
Ordered Locus Names:BpOF4_11565Imported
OrganismiBacillus pseudofirmus (strain OF4)Imported
Taxonomic identifieri398511 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001544: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD3FVT4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation
Contains HTH luxR-type DNA-binding domain.SAAS annotation
Contains response regulatory domain.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000034813.
KOiK11618.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3FVT4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGNNLVKVLL VDDHEMVRMG MSAFLQTQPD IEVIGQASNG LEGVEMTKRL
60 70 80 90 100
EPDVIVMDLV MEKMDGIEAT RAIMKDKPLS KVIVLTSFID DEKVYPVIEA
110 120 130 140 150
GAFSYLLKTS SAKEIAQAIR QAADGEPVLA SKVTNKMMNH MRSQKEKALH
160 170 180 190 200
EELTPRELEV LKLIGVGQSN QEIAESLFIG IKTVKTHVSN ILQKLALEDR
210
TQIAIYAHRH GLVK
Length:214
Mass (Da):23,777
Last modified:March 23, 2010 - v1
Checksum:i26DA9FECBE6E1752
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001878 Genomic DNA. Translation: ADC50366.1.
RefSeqiYP_003427258.1. NC_013791.2.

Genome annotation databases

EnsemblBacteriaiADC50366; ADC50366; BpOF4_11565.
GeneIDi8767361.
KEGGibpf:BpOF4_11565.
PATRICi31947166. VBIBacPse80461_2253.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001878 Genomic DNA. Translation: ADC50366.1 .
RefSeqi YP_003427258.1. NC_013791.2.

3D structure databases

ProteinModelPortali D3FVT4.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADC50366 ; ADC50366 ; BpOF4_11565 .
GeneIDi 8767361.
KEGGi bpf:BpOF4_11565.
PATRICi 31947166. VBIBacPse80461_2253.

Phylogenomic databases

HOGENOMi HOG000034813.
KOi K11618.

Enzyme and pathway databases

BioCyci BPSE398511:GJI9-782-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view ]
PRINTSi PR00038. HTHLUXR.
SMARTi SM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view ]
SUPFAMi SSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEi PS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4."
    Janto B., Ahmed A., Ito M., Liu J., Hicks D.B., Pagni S., Fackelmayer O.J., Smith T.A., Earl J., Elbourne L.D., Hassan K., Paulsen I.T., Kolsto A.B., Tourasse N.J., Ehrlich G.D., Boissy R., Ivey D.M., Li G.
    , Xue Y., Ma Y., Hu F.Z., Krulwich T.A.
    Environ. Microbiol. 13:3289-3309(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: OF4Imported.

Entry informationi

Entry nameiD3FVT4_BACPE
AccessioniPrimary (citable) accession number: D3FVT4
Entry historyi
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: November 26, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3