D3FSP1 (D3FSP1_BACPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Name:	alr EMBL ADC50009.1
Ordered Locus Names:	BpOF4_09770 EMBL ADC50009.1

Organism

Bacillus pseudofirmus (strain OF4) [Complete proteome] [HAMAP] EMBL ADC50009.1

Taxonomic identifier

398511 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus pseudofirmus

Protein attributes

Sequence length	369 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase SAAS SAAS020622 RuleBase RU000608
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D3FSP1 [UniParc]. Last modified March 23, 2010. Version 1. Checksum: 6AB6A9FCF9D85728	FASTA	369	40,323
	10 20 30 40 50 60 MKTSSFRNTY AQISLQALKE NAASFKASLQ SPACRLMAVV KGDGYGHGAV AAASSALNGG 70 80 90 100 110 120 ADYLGVAILD EAIELRDAGV EAPILVLGYT SPHALREAIS RNITLTVFST DVRDALLEVA 130 140 150 160 170 180 SEAESPIKVH IKTETGMGRV GVQTKEELLD VMTPLYHHNN IEVEGIFTHF AEADNLQSTY 190 200 210 220 230 240 TDEQFARFLS FIEAIEKDDM HVPIKHCCNS AGTLFHKDKH LDMVRVGISL YGLRPDVSLE 250 260 270 280 290 300 FPIELTQAMR LFSSIVSLRK LPEGSSISYG RTHKLSSEKV VATMPIGYAD GLSRALSNKG 310 320 330 340 350 360 FVTLHGQKAP ILGRVCMDQT MIDVTDIPDA ALGDHVEFPI DEMAELTGTI NYEIVCAVSK RVPRYYEEN

References

[1]

"Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4." Janto B., Ahmed A., Ito M., Liu J., Hicks D.B., Pagni S., Fackelmayer O.J., Smith T.A., Earl J., Elbourne L.D., Hassan K., Paulsen I.T., Kolsto A.B., Tourasse N.J., Ehrlich G.D., Boissy R., Ivey D.M., Li G. , Xue Y., Ma Y., Hu F.Z., Krulwich T.A. Environ. Microbiol. 13:3289-3309(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: OF4 EMBL ADC50009.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001878 Genomic DNA. Translation: ADC50009.1.
RefSeq	YP_003426901.1. NC_013791.2.
3D structure databases
ProteinModelPortal	D3FSP1.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADC50009; ADC50009; BpOF4_09770.
GeneID	8766985.
KEGG	bpf:BpOF4_09770.
PATRIC	31946432. VBIBacPse80461_1905.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
Enzyme and pathway databases
BioCyc	BPSE398511:GJI9-406-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D3FSP1_BACPE

Accession

Primary (citable) accession number: D3FSP1

Entry history

Integrated into UniProtKB/TrEMBL:	March 23, 2010
Last sequence update:	March 23, 2010
Last modified:	May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)