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D3FA34

- D3FA34_CONWI

UniProt

D3FA34 - D3FA34_CONWI

Protein
Submitted name:

DNA ligase D

Gene

Cwoe_4716

Organism
Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (23 Mar 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCWOE469383:GH82-4754-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Cwoe_4716Imported
    OrganismiConexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)Imported
    Taxonomic identifieri469383 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaRubrobacteridaeSolirubrobacteralesConexibacteraceaeConexibacter
    ProteomesiUP000008229: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiEIKWDGV.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3FA34-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPALDVCPI ALPGYGPPMS PRRDSLDAYR AKRDFGATIE PAPGDAAAAR    50
    SSRADDAPAE FVVQQHDATR LHWDLRLERD GTLASWALPR GLPLDPHDDR 100
    IAVRTEDHPL EYLDFHGEIP KGSYGAGTME IFDRGTYDVH EFTDRKVEVT 150
    LHGERGRAVG RYGLFPLGRR AERADGPQGD WMIHRMEPPA DPEREPLPEH 200
    LLPMLAKAGE LPAAREDDAW GYEIKWDGVR ALLWSDHGHV RVQSRTQREI 250
    AERYPEVKPI GRALGAHEVV LDGELVALDE HGKPSFERLQ SRMNAGSEGA 300
    IRRAARAVAV TYVIFDLLHL DGRSLLHEPY ATRREALRAL SLDGAAWRTP 350
    AYHRGHGAAL LAATREQGLE GIVAKRLDGV YEPGRRSGAW RKLRNRLRQE 400
    LVIGGWLEGE GNRAQRIGAL LVGDREQDGG PLRYAGRVGS GLTEAMLDDL 450
    LARLRARERA GSPFAPAPAA ARIPRGAHWV EPELVADVEY SERTSEGLLR 500
    QPVFKGLRDD KPPELVVRER ADLRGQRFSN WDKVLYPASG FTKGDLIDYY 550
    VAIAPTLLPH LQDRPITLRR WPDGVEGRSF YEKNAPSHRP DWVQTASIFS 600
    RSERRRIDYC LVQDTATLAW TANLAAIELH PSLSLARAMS HPTAVVFDLD 650
    PGEPAGLPEC AEVALVLEGL FGQLGLRSVV KTSGSKGLQV YVPLGERAAT 700
    YEQTKPFAKR IAELLERRLP DLVVARMSKR LRAGKVLVDW SQNDEHKTTV 750
    AVYAVRARDR PTVSTPLSWE ELRAAHAAGV ADRLAFEPAD VLARVADQGD 800
    LFASMLGSAQ ELPQL 815
    Length:815
    Mass (Da):90,361
    Last modified:March 23, 2010 - v1
    Checksum:i470935FA8951B905
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001854 Genomic DNA. Translation: ADB53129.1.
    RefSeqiYP_003396504.1. NC_013739.1.

    Genome annotation databases

    EnsemblBacteriaiADB53129; ADB53129; Cwoe_4716.
    GeneIDi8735182.
    KEGGicwo:Cwoe_4716.
    PATRICi32051515. VBIConWoe21639_4746.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001854 Genomic DNA. Translation: ADB53129.1 .
    RefSeqi YP_003396504.1. NC_013739.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADB53129 ; ADB53129 ; Cwoe_4716 .
    GeneIDi 8735182.
    KEGGi cwo:Cwoe_4716.
    PATRICi 32051515. VBIConWoe21639_4746.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi EIKWDGV.

    Enzyme and pathway databases

    BioCyci CWOE469383:GH82-4754-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 14684 / JCM 11494 / NBRC 100937 / ID131577Imported.

    Entry informationi

    Entry nameiD3FA34_CONWI
    AccessioniPrimary (citable) accession number: D3FA34
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 23, 2010
    Last sequence update: March 23, 2010
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3