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Protein
Submitted name:

DNA ligase D

Gene

Cwoe_4716

Organism
Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCWOE469383:GH82-4754-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Cwoe_4716Imported
OrganismiConexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)Imported
Taxonomic identifieri469383 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaRubrobacteridaeSolirubrobacteralesConexibacteraceaeConexibacter
ProteomesiUP000008229 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3FA34-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPALDVCPI ALPGYGPPMS PRRDSLDAYR AKRDFGATIE PAPGDAAAAR
60 70 80 90 100
SSRADDAPAE FVVQQHDATR LHWDLRLERD GTLASWALPR GLPLDPHDDR
110 120 130 140 150
IAVRTEDHPL EYLDFHGEIP KGSYGAGTME IFDRGTYDVH EFTDRKVEVT
160 170 180 190 200
LHGERGRAVG RYGLFPLGRR AERADGPQGD WMIHRMEPPA DPEREPLPEH
210 220 230 240 250
LLPMLAKAGE LPAAREDDAW GYEIKWDGVR ALLWSDHGHV RVQSRTQREI
260 270 280 290 300
AERYPEVKPI GRALGAHEVV LDGELVALDE HGKPSFERLQ SRMNAGSEGA
310 320 330 340 350
IRRAARAVAV TYVIFDLLHL DGRSLLHEPY ATRREALRAL SLDGAAWRTP
360 370 380 390 400
AYHRGHGAAL LAATREQGLE GIVAKRLDGV YEPGRRSGAW RKLRNRLRQE
410 420 430 440 450
LVIGGWLEGE GNRAQRIGAL LVGDREQDGG PLRYAGRVGS GLTEAMLDDL
460 470 480 490 500
LARLRARERA GSPFAPAPAA ARIPRGAHWV EPELVADVEY SERTSEGLLR
510 520 530 540 550
QPVFKGLRDD KPPELVVRER ADLRGQRFSN WDKVLYPASG FTKGDLIDYY
560 570 580 590 600
VAIAPTLLPH LQDRPITLRR WPDGVEGRSF YEKNAPSHRP DWVQTASIFS
610 620 630 640 650
RSERRRIDYC LVQDTATLAW TANLAAIELH PSLSLARAMS HPTAVVFDLD
660 670 680 690 700
PGEPAGLPEC AEVALVLEGL FGQLGLRSVV KTSGSKGLQV YVPLGERAAT
710 720 730 740 750
YEQTKPFAKR IAELLERRLP DLVVARMSKR LRAGKVLVDW SQNDEHKTTV
760 770 780 790 800
AVYAVRARDR PTVSTPLSWE ELRAAHAAGV ADRLAFEPAD VLARVADQGD
810
LFASMLGSAQ ELPQL
Length:815
Mass (Da):90,361
Last modified:March 23, 2010 - v1
Checksum:i470935FA8951B905
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001854 Genomic DNA. Translation: ADB53129.1.
RefSeqiWP_012936180.1. NC_013739.1.
YP_003396504.1. NC_013739.1.

Genome annotation databases

EnsemblBacteriaiADB53129; ADB53129; Cwoe_4716.
KEGGicwo:Cwoe_4716.
PATRICi32051515. VBIConWoe21639_4746.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001854 Genomic DNA. Translation: ADB53129.1.
RefSeqiWP_012936180.1. NC_013739.1.
YP_003396504.1. NC_013739.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADB53129; ADB53129; Cwoe_4716.
KEGGicwo:Cwoe_4716.
PATRICi32051515. VBIConWoe21639_4746.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciCWOE469383:GH82-4754-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14684 / JCM 11494 / NBRC 100937 / ID131577Imported.

Entry informationi

Entry nameiD3FA34_CONWI
AccessioniPrimary (citable) accession number: D3FA34
Entry historyi
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: May 27, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.