Mandelate racemase/muconate lactonizing protein - Geobacillus sp. (strain Y412MC10)

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D3EID5 (D3EID5_GEOS4) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 24. History...

Clusters with 100%, 90%, 50% identity |

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Mandelate racemase/muconate lactonizing protein EMBL ACX65609.1

Gene names

Ordered Locus Names:

GYMC10_3367

Organism

Geobacillus sp. (strain Y412MC10) [Complete proteome] [HAMAP] EMBL ACX65609.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Firmicutes › Bacilli › Bacillales › Paenibacillaceae › Paenibacillus

Protein attributes

Sequence length	382 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Magnesium PDB 3N4F PDB 3OPS PDB 3P3B Metal-binding SAAS SAAS013342 PDB 3N4F PDB 3OPS PDB 3P3B
Technical term	3D-structure PDB 3QPE PDB 3N4F PDB 3OPS PDB 3P3B PDB 3V5C PDB 3V5F PDB 3VCC Complete proteome
Gene Ontology (GO)
Molecular_function	catalytic activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

1

Magnesium 1 PDB 3N4F PDB 3OPS PDB 3P3B

Metal binding

1

Magnesium 1 PDB 3N4F PDB 3OPS PDB 3P3B

Metal binding

1

Magnesium 2 PDB 3N4F PDB 3OPS PDB 3P3B

Metal binding

1

Magnesium 2 PDB 3N4F PDB 3OPS PDB 3P3B

Metal binding

1

Magnesium 2 PDB 3N4F PDB 3OPS PDB 3P3B

Metal binding

1

Magnesium 1 PDB 3N4F PDB 3OPS PDB 3P3B

Sequences

Sequence

Length

Mass (Da)

Tools

D3EID5 [UniParc].

Last modified March 23, 2010. Version 1.
Checksum: EF4FCEFFAC21F7F4
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382

42,658

        10         20         30         40         50         60 
MNITGIQSDW KVEKIEFAKL TGERARSAGA NGRIGVHGKS CTVDIARITI DGQTGYGSSI 

        70         80         90        100        110        120 
HMTPEWAEDV IGRRLLDLFD DRGRLREAYR LQLEYPVLDW LGQRQGKPVY DLVSGAHLET 

       130        140        150        160        170        180 
GASLVVPCYD TSLYFDDLHL ADERAAVALM QEEAMQGYAK GQRHFKIKVG RGGRHMPLWE 

       190        200        210        220        230        240 
GTKRDIAIVR GISEVAGPAG KIMIDANNAY NLNLTKEVLA ALSDVNLYWL EEAFHEDEAL 

       250        260        270        280        290        300 
YEDLKEWLGQ RGQNVLIADG EGLASPHLIE WATRGRVDVL QYDIIWPGFT HWMELGEKLD 

       310        320        330        340        350        360 
AHGLRSAPHC YGNAYGIYAS GHLSAAVRNF EFVEYDDITI EGMDVSGYRI ENGEIHVPAT 

       370        380 
PGFGIVFDDE LVTYLINRSG WS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of Geobacillus sp. Y412MC10." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Brumm P., Mead D. Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Y412MC10.
[2]	"CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10." Malashkevich V.N., Toro R., Sauder J.M., Burley S.K., Almo S.C. Submitted (MAY-2010) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.88 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
[3]	"Crystal structure ofmandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate." Malashkevich V.N., Patskovsky Y., Ramagopal U., Toro R., Sauder J.M., Burley S.K., Almo S.C. Submitted (SEP-2010) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
[4]	"CRYSTAL STRUCTURE OF Galacturonate DEHYDRATASE FROM GEOBACILLUS SP. COMPLEXED WITH D-TARTRATE." Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Burley S.K., Almo S.C. Submitted (OCT-2010) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
[5]	"Crystal structure of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with D-Galacturonate and 5-keto-4-deoxy-D-Galacturonate." Fedorov A.A., Fedorov E.V., Mills-Groninger F., Gerlt J.A., Almo S.C. Submitted (FEB-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 2-382.
[6]	"Crystal structure of the mutant E234A of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg." Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C. Submitted (DEC-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.53 ANGSTROMS) OF 2-382.
[7]	"CRYSTAL STRUCTURE OF D-Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg." Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C. Submitted (JAN-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.64 ANGSTROMS) OF 2-382.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP001793 Genomic DNA. Translation: ACX65609.1.

RefSeq

YP_003243416.1. NC_013406.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3N4F	X-ray	1.88	A/B/C/D	2-382	[»]
3OPS	X-ray	2.20	A/B/C/D	2-382	[»]
3P3B	X-ray	1.65	A/B	2-382	[»]
3QPE	X-ray	1.80	A/B/C/D	2-382	[»]
3V5C	X-ray	1.53	A/B/C/D	2-382	[»]
3V5F	X-ray	2.00	A	2-382	[»]
3VCC	X-ray	1.64	A/B	2-382	[»]

ProteinModelPortal

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ACX65609; ACX65609; GYMC10_3367.

GeneID

KEGG

gym:GYMC10_3367.

PATRIC

32155249. VBIGeoSp56627_3336.

Organism-specific databases

CMR

Phylogenomic databases

HOGENOM

OMA

Enzyme and pathway databases

BioCyc

PSP481743:GH8K-3414-MONOMER.

Family and domain databases

InterPro

IPR013342. Mandelate_racemase_C.
IPR001354. MR_MLE.
[Graphical view]

PANTHER

PTHR13794. PTHR13794. 1 hit.

Pfam

PF01188. MR_MLE. 1 hit.
[Graphical view]

SMART

SM00922. MR_MLE. 1 hit.
[Graphical view]

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

D3EID5_GEOS4

Accession

Primary (citable) accession number: D3EID5

Entry history

Integrated into UniProtKB/TrEMBL:	March 23, 2010
Last sequence update:	March 23, 2010
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info