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Protein
Submitted name:

Mandelate racemase/muconate lactonizing protein

Gene

GYMC10_3367

Organism
Geobacillus sp. (strain Y412MC10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi205 – 2051Magnesium 1Combined sources
Metal bindingi231 – 2311Magnesium 1Combined sources
Metal bindingi232 – 2321Magnesium 2Combined sources
Metal bindingi236 – 2361Magnesium 2Combined sources
Metal bindingi259 – 2591Magnesium 2Combined sources
Metal bindingi261 – 2611Magnesium 1Combined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

MagnesiumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciPSP481743:GH8K-3414-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Mandelate racemase/muconate lactonizing proteinImported
Gene namesi
Ordered Locus Names:GYMC10_3367Imported
OrganismiGeobacillus sp. (strain Y412MC10)Imported
Taxonomic identifieri481743 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000002381 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi481743.GYMC10_3367.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3N4FX-ray1.88A/B/C/D2-382[»]
3OPSX-ray2.20A/B/C/D2-382[»]
3P3BX-ray1.65A/B2-382[»]
3QPEX-ray1.80A/B/C/D2-382[»]
3V5CX-ray1.53A/B/C/D2-382[»]
3V5FX-ray2.00A2-382[»]
3VCCX-ray1.64A/B2-382[»]
ProteinModelPortaliD3EID5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiD3EID5.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000049713.
OMAiIMIDANN.
OrthoDBiEOG6HMXC7.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N_like.
IPR013342. Mandelate_racemase_C.
IPR001354. MR/MLE/MAL.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF01188. MR_MLE. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.

Sequencei

Sequence statusi: Complete.

D3EID5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNITGIQSDW KVEKIEFAKL TGERARSAGA NGRIGVHGKS CTVDIARITI
60 70 80 90 100
DGQTGYGSSI HMTPEWAEDV IGRRLLDLFD DRGRLREAYR LQLEYPVLDW
110 120 130 140 150
LGQRQGKPVY DLVSGAHLET GASLVVPCYD TSLYFDDLHL ADERAAVALM
160 170 180 190 200
QEEAMQGYAK GQRHFKIKVG RGGRHMPLWE GTKRDIAIVR GISEVAGPAG
210 220 230 240 250
KIMIDANNAY NLNLTKEVLA ALSDVNLYWL EEAFHEDEAL YEDLKEWLGQ
260 270 280 290 300
RGQNVLIADG EGLASPHLIE WATRGRVDVL QYDIIWPGFT HWMELGEKLD
310 320 330 340 350
AHGLRSAPHC YGNAYGIYAS GHLSAAVRNF EFVEYDDITI EGMDVSGYRI
360 370 380
ENGEIHVPAT PGFGIVFDDE LVTYLINRSG WS
Length:382
Mass (Da):42,658
Last modified:March 23, 2010 - v1
Checksum:iEF4FCEFFAC21F7F4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001793 Genomic DNA. Translation: ACX65609.1.
RefSeqiWP_015735594.1. NC_013406.1.
YP_003243416.1. NC_013406.1.

Genome annotation databases

EnsemblBacteriaiACX65609; ACX65609; GYMC10_3367.
KEGGigym:GYMC10_3367.
PATRICi32155249. VBIGeoSp56627_3336.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001793 Genomic DNA. Translation: ACX65609.1.
RefSeqiWP_015735594.1. NC_013406.1.
YP_003243416.1. NC_013406.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3N4FX-ray1.88A/B/C/D2-382[»]
3OPSX-ray2.20A/B/C/D2-382[»]
3P3BX-ray1.65A/B2-382[»]
3QPEX-ray1.80A/B/C/D2-382[»]
3V5CX-ray1.53A/B/C/D2-382[»]
3V5FX-ray2.00A2-382[»]
3VCCX-ray1.64A/B2-382[»]
ProteinModelPortaliD3EID5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi481743.GYMC10_3367.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACX65609; ACX65609; GYMC10_3367.
KEGGigym:GYMC10_3367.
PATRICi32155249. VBIGeoSp56627_3336.

Phylogenomic databases

HOGENOMiHOG000049713.
OMAiIMIDANN.
OrthoDBiEOG6HMXC7.

Enzyme and pathway databases

BioCyciPSP481743:GH8K-3414-MONOMER.

Miscellaneous databases

EvolutionaryTraceiD3EID5.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N_like.
IPR013342. Mandelate_racemase_C.
IPR001354. MR/MLE/MAL.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF01188. MR_MLE. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of Geobacillus sp. Y412MC10."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Brumm P., Mead D.
    Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y412MC10Imported.
  2. "CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10."
    Malashkevich V.N., Toro R., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (MAY-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.88 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
  3. "Crystal structure ofmandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate."
    Malashkevich V.N., Patskovsky Y., Ramagopal U., Toro R., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (SEP-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
  4. "CRYSTAL STRUCTURE OF Galacturonate DEHYDRATASE FROM GEOBACILLUS SP. COMPLEXED WITH D-TARTRATE."
    Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Burley S.K., Almo S.C.
    Submitted (OCT-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
  5. "Crystal structure of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with D-Galacturonate and 5-keto-4-deoxy-D-Galacturonate."
    Fedorov A.A., Fedorov E.V., Mills-Groninger F., Gerlt J.A., Almo S.C.
    Submitted (FEB-2011) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
  6. "Crystal structure of the mutant E234A of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg."
    Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C.
    Submitted (DEC-2011) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.53 ANGSTROMS) OF 2-382.
  7. "CRYSTAL STRUCTURE OF D-Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg."
    Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C.
    Submitted (JAN-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.64 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.

Entry informationi

Entry nameiD3EID5_GEOS4
AccessioniPrimary (citable) accession number: D3EID5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: June 24, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.