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D3EID5 (D3EID5_GEOS4) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:GYMC10_3367 EMBL ACX65609.1
OrganismGeobacillus sp. (strain Y412MC10) [Complete proteome] [HAMAP] EMBL ACX65609.1
Taxonomic identifier481743 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus

Protein attributes

Sequence length382 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding2051Magnesium 1 PDB 3QPE PDB 3N4F PDB 3OPS PDB 3P3B PDB 3V5F PDB 3VCC
Metal binding2311Magnesium 1 PDB 3QPE PDB 3N4F PDB 3OPS PDB 3P3B PDB 3V5F PDB 3VCC
Metal binding2321Magnesium 2 PDB 3QPE PDB 3N4F PDB 3OPS PDB 3P3B PDB 3VCC
Metal binding2361Magnesium 2 PDB 3QPE PDB 3N4F PDB 3OPS PDB 3P3B PDB 3VCC
Metal binding2591Magnesium 2 PDB 3QPE PDB 3N4F PDB 3OPS PDB 3P3B PDB 3VCC
Metal binding2611Magnesium 1 PDB 3QPE PDB 3N4F PDB 3OPS PDB 3P3B PDB 3V5F PDB 3VCC

Sequences

Sequence LengthMass (Da)Tools
D3EID5 [UniParc].

Last modified March 23, 2010. Version 1.
Checksum: EF4FCEFFAC21F7F4

FASTA38242,658
        10         20         30         40         50         60 
MNITGIQSDW KVEKIEFAKL TGERARSAGA NGRIGVHGKS CTVDIARITI DGQTGYGSSI 

        70         80         90        100        110        120 
HMTPEWAEDV IGRRLLDLFD DRGRLREAYR LQLEYPVLDW LGQRQGKPVY DLVSGAHLET 

       130        140        150        160        170        180 
GASLVVPCYD TSLYFDDLHL ADERAAVALM QEEAMQGYAK GQRHFKIKVG RGGRHMPLWE 

       190        200        210        220        230        240 
GTKRDIAIVR GISEVAGPAG KIMIDANNAY NLNLTKEVLA ALSDVNLYWL EEAFHEDEAL 

       250        260        270        280        290        300 
YEDLKEWLGQ RGQNVLIADG EGLASPHLIE WATRGRVDVL QYDIIWPGFT HWMELGEKLD 

       310        320        330        340        350        360 
AHGLRSAPHC YGNAYGIYAS GHLSAAVRNF EFVEYDDITI EGMDVSGYRI ENGEIHVPAT 

       370        380 
PGFGIVFDDE LVTYLINRSG WS 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of Geobacillus sp. Y412MC10."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Brumm P., Mead D.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Y412MC10.
[2]"CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10."
Malashkevich V.N., Toro R., Sauder J.M., Burley S.K., Almo S.C.
Submitted (MAY-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.88 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
[3]"Crystal structure ofmandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate."
Malashkevich V.N., Patskovsky Y., Ramagopal U., Toro R., Sauder J.M., Burley S.K., Almo S.C.
Submitted (SEP-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
[4]"CRYSTAL STRUCTURE OF Galacturonate DEHYDRATASE FROM GEOBACILLUS SP. COMPLEXED WITH D-TARTRATE."
Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Burley S.K., Almo S.C.
Submitted (OCT-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
[5]"Crystal structure of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with D-Galacturonate and 5-keto-4-deoxy-D-Galacturonate."
Fedorov A.A., Fedorov E.V., Mills-Groninger F., Gerlt J.A., Almo S.C.
Submitted (FEB-2011) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
[6]"Crystal structure of the mutant E234A of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg."
Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C.
Submitted (DEC-2011) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.53 ANGSTROMS) OF 2-382.
[7]"CRYSTAL STRUCTURE OF D-Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg."
Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C.
Submitted (JAN-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.64 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001793 Genomic DNA. Translation: ACX65609.1.
RefSeqYP_003243416.1. NC_013406.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3N4FX-ray1.88A/B/C/D2-382[»]
3OPSX-ray2.20A/B/C/D2-382[»]
3P3BX-ray1.65A/B2-382[»]
3QPEX-ray1.80A/B/C/D2-382[»]
3V5CX-ray1.53A/B/C/D2-382[»]
3V5FX-ray2.00A2-382[»]
3VCCX-ray1.64A/B2-382[»]
ProteinModelPortalD3EID5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX65609; ACX65609; GYMC10_3367.
GeneID8517551.
KEGGgym:GYMC10_3367.
PATRIC32155249. VBIGeoSp56627_3336.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000049713.
OMAIDANNAY.
OrthoDBEOG6HMXC7.

Enzyme and pathway databases

BioCycPSP481743:GH8K-3414-MONOMER.

Family and domain databases

InterProIPR013342. Mandelate_racemase_C.
IPR001354. MR_MLE.
[Graphical view]
PANTHERPTHR13794. PTHR13794. 1 hit.
PfamPF01188. MR_MLE. 1 hit.
[Graphical view]
SMARTSM00922. MR_MLE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceD3EID5.

Entry information

Entry nameD3EID5_GEOS4
AccessionPrimary (citable) accession number: D3EID5
Entry history
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: December 11, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)