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D3EID5

- D3EID5_GEOS4

UniProt

D3EID5 - D3EID5_GEOS4

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Protein
Submitted name:

Mandelate racemase/muconate lactonizing protein

Gene

GYMC10_3367

Organism
Geobacillus sp. (strain Y412MC10)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi205 – 2051Magnesium 1Imported
Metal bindingi231 – 2311Magnesium 1Imported
Metal bindingi232 – 2321Magnesium 2Imported
Metal bindingi236 – 2361Magnesium 2Imported
Metal bindingi259 – 2591Magnesium 2Imported
Metal bindingi261 – 2611Magnesium 1Imported

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

MagnesiumImported, Metal-bindingSAAS annotationImported

Enzyme and pathway databases

BioCyciPSP481743:GH8K-3414-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Mandelate racemase/muconate lactonizing proteinImported
Gene namesi
Ordered Locus Names:GYMC10_3367Imported
OrganismiGeobacillus sp. (strain Y412MC10)Imported
Taxonomic identifieri481743 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000002381: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3N4FX-ray1.88A/B/C/D2-382[»]
3OPSX-ray2.20A/B/C/D2-382[»]
3P3BX-ray1.65A/B2-382[»]
3QPEX-ray1.80A/B/C/D2-382[»]
3V5CX-ray1.53A/B/C/D2-382[»]
3V5FX-ray2.00A2-382[»]
3VCCX-ray1.64A/B2-382[»]
ProteinModelPortaliD3EID5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiD3EID5.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000049713.
OMAiIDANNAY.
OrthoDBiEOG6HMXC7.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N_like.
IPR013342. Mandelate_racemase_C.
IPR001354. MR/MLE/MAL.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF01188. MR_MLE. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.

Sequencei

Sequence statusi: Complete.

D3EID5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNITGIQSDW KVEKIEFAKL TGERARSAGA NGRIGVHGKS CTVDIARITI
60 70 80 90 100
DGQTGYGSSI HMTPEWAEDV IGRRLLDLFD DRGRLREAYR LQLEYPVLDW
110 120 130 140 150
LGQRQGKPVY DLVSGAHLET GASLVVPCYD TSLYFDDLHL ADERAAVALM
160 170 180 190 200
QEEAMQGYAK GQRHFKIKVG RGGRHMPLWE GTKRDIAIVR GISEVAGPAG
210 220 230 240 250
KIMIDANNAY NLNLTKEVLA ALSDVNLYWL EEAFHEDEAL YEDLKEWLGQ
260 270 280 290 300
RGQNVLIADG EGLASPHLIE WATRGRVDVL QYDIIWPGFT HWMELGEKLD
310 320 330 340 350
AHGLRSAPHC YGNAYGIYAS GHLSAAVRNF EFVEYDDITI EGMDVSGYRI
360 370 380
ENGEIHVPAT PGFGIVFDDE LVTYLINRSG WS
Length:382
Mass (Da):42,658
Last modified:March 23, 2010 - v1
Checksum:iEF4FCEFFAC21F7F4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001793 Genomic DNA. Translation: ACX65609.1.
RefSeqiWP_015735594.1. NC_013406.1.
YP_003243416.1. NC_013406.1.

Genome annotation databases

EnsemblBacteriaiACX65609; ACX65609; GYMC10_3367.
GeneIDi8517551.
KEGGigym:GYMC10_3367.
PATRICi32155249. VBIGeoSp56627_3336.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001793 Genomic DNA. Translation: ACX65609.1 .
RefSeqi WP_015735594.1. NC_013406.1.
YP_003243416.1. NC_013406.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3N4F X-ray 1.88 A/B/C/D 2-382 [» ]
3OPS X-ray 2.20 A/B/C/D 2-382 [» ]
3P3B X-ray 1.65 A/B 2-382 [» ]
3QPE X-ray 1.80 A/B/C/D 2-382 [» ]
3V5C X-ray 1.53 A/B/C/D 2-382 [» ]
3V5F X-ray 2.00 A 2-382 [» ]
3VCC X-ray 1.64 A/B 2-382 [» ]
ProteinModelPortali D3EID5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACX65609 ; ACX65609 ; GYMC10_3367 .
GeneIDi 8517551.
KEGGi gym:GYMC10_3367.
PATRICi 32155249. VBIGeoSp56627_3336.

Phylogenomic databases

HOGENOMi HOG000049713.
OMAi IDANNAY.
OrthoDBi EOG6HMXC7.

Enzyme and pathway databases

BioCyci PSP481743:GH8K-3414-MONOMER.

Miscellaneous databases

EvolutionaryTracei D3EID5.

Family and domain databases

Gene3Di 3.20.20.120. 1 hit.
InterProi IPR029065. Enolase_C-like.
IPR029017. Enolase_N_like.
IPR013342. Mandelate_racemase_C.
IPR001354. MR/MLE/MAL.
[Graphical view ]
PANTHERi PTHR13794. PTHR13794. 1 hit.
Pfami PF01188. MR_MLE. 1 hit.
[Graphical view ]
SMARTi SM00922. MR_MLE. 1 hit.
[Graphical view ]
SUPFAMi SSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of Geobacillus sp. Y412MC10."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Brumm P., Mead D.
    Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y412MC10Imported.
  2. "CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10."
    Malashkevich V.N., Toro R., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (MAY-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.88 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
  3. "Crystal structure ofmandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate."
    Malashkevich V.N., Patskovsky Y., Ramagopal U., Toro R., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (SEP-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
  4. "CRYSTAL STRUCTURE OF Galacturonate DEHYDRATASE FROM GEOBACILLUS SP. COMPLEXED WITH D-TARTRATE."
    Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Burley S.K., Almo S.C.
    Submitted (OCT-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
  5. "Crystal structure of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with D-Galacturonate and 5-keto-4-deoxy-D-Galacturonate."
    Fedorov A.A., Fedorov E.V., Mills-Groninger F., Gerlt J.A., Almo S.C.
    Submitted (FEB-2011) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
  6. "Crystal structure of the mutant E234A of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg."
    Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C.
    Submitted (DEC-2011) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.53 ANGSTROMS) OF 2-382.
  7. "CRYSTAL STRUCTURE OF D-Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg."
    Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C.
    Submitted (JAN-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.64 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.

Entry informationi

Entry nameiD3EID5_GEOS4
AccessioniPrimary (citable) accession number: D3EID5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: October 29, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3