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D3EID5

- D3EID5_GEOS4

UniProt

D3EID5 - D3EID5_GEOS4

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Protein
Submitted name: Mandelate racemase/muconate lactonizing protein
Gene
GYMC10_3367
Organism
Geobacillus sp. (strain Y412MC10)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi205 – 2051Magnesium 1Imported
Metal bindingi231 – 2311Magnesium 1Imported
Metal bindingi232 – 2321Magnesium 2Imported
Metal bindingi236 – 2361Magnesium 2Imported
Metal bindingi259 – 2591Magnesium 2Imported
Metal bindingi261 – 2611Magnesium 1Imported

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

GO - Biological processi

    Complete GO annotation...

    Keywords - Ligandi

    MagnesiumImported, Metal-bindingSAAS annotationsImported

    Enzyme and pathway databases

    BioCyciPSP481743:GH8K-3414-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Mandelate racemase/muconate lactonizing proteinImported
    Gene namesi
    Ordered Locus Names:GYMC10_3367Imported
    OrganismiGeobacillus sp. (strain Y412MC10)Imported
    Taxonomic identifieri481743 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
    ProteomesiUP000002381: Chromosome

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3N4FX-ray1.88A/B/C/D2-382[»]
    3OPSX-ray2.20A/B/C/D2-382[»]
    3P3BX-ray1.65A/B2-382[»]
    3QPEX-ray1.80A/B/C/D2-382[»]
    3V5CX-ray1.53A/B/C/D2-382[»]
    3V5FX-ray2.00A2-382[»]
    3VCCX-ray1.64A/B2-382[»]
    ProteinModelPortaliD3EID5.

    Miscellaneous databases

    EvolutionaryTraceiD3EID5.

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000049713.
    OMAiIDANNAY.
    OrthoDBiEOG6HMXC7.

    Family and domain databases

    Gene3Di3.20.20.120. 1 hit.
    InterProiIPR029065. Enolase_C-like.
    IPR029017. Enolase_N_like.
    IPR013342. Mandelate_racemase_C.
    IPR001354. MR_MLE.
    [Graphical view]
    PANTHERiPTHR13794. PTHR13794. 1 hit.
    PfamiPF01188. MR_MLE. 1 hit.
    [Graphical view]
    SMARTiSM00922. MR_MLE. 1 hit.
    [Graphical view]
    SUPFAMiSSF51604. SSF51604. 1 hit.
    SSF54826. SSF54826. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D3EID5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNITGIQSDW KVEKIEFAKL TGERARSAGA NGRIGVHGKS CTVDIARITI    50
    DGQTGYGSSI HMTPEWAEDV IGRRLLDLFD DRGRLREAYR LQLEYPVLDW 100
    LGQRQGKPVY DLVSGAHLET GASLVVPCYD TSLYFDDLHL ADERAAVALM 150
    QEEAMQGYAK GQRHFKIKVG RGGRHMPLWE GTKRDIAIVR GISEVAGPAG 200
    KIMIDANNAY NLNLTKEVLA ALSDVNLYWL EEAFHEDEAL YEDLKEWLGQ 250
    RGQNVLIADG EGLASPHLIE WATRGRVDVL QYDIIWPGFT HWMELGEKLD 300
    AHGLRSAPHC YGNAYGIYAS GHLSAAVRNF EFVEYDDITI EGMDVSGYRI 350
    ENGEIHVPAT PGFGIVFDDE LVTYLINRSG WS 382
    Length:382
    Mass (Da):42,658
    Last modified:March 23, 2010 - v1
    Checksum:iEF4FCEFFAC21F7F4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001793 Genomic DNA. Translation: ACX65609.1.
    RefSeqiWP_015735594.1. NC_013406.1.
    YP_003243416.1. NC_013406.1.

    Genome annotation databases

    EnsemblBacteriaiACX65609; ACX65609; GYMC10_3367.
    GeneIDi8517551.
    KEGGigym:GYMC10_3367.
    PATRICi32155249. VBIGeoSp56627_3336.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001793 Genomic DNA. Translation: ACX65609.1 .
    RefSeqi WP_015735594.1. NC_013406.1.
    YP_003243416.1. NC_013406.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3N4F X-ray 1.88 A/B/C/D 2-382 [» ]
    3OPS X-ray 2.20 A/B/C/D 2-382 [» ]
    3P3B X-ray 1.65 A/B 2-382 [» ]
    3QPE X-ray 1.80 A/B/C/D 2-382 [» ]
    3V5C X-ray 1.53 A/B/C/D 2-382 [» ]
    3V5F X-ray 2.00 A 2-382 [» ]
    3VCC X-ray 1.64 A/B 2-382 [» ]
    ProteinModelPortali D3EID5.
    ModBasei Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACX65609 ; ACX65609 ; GYMC10_3367 .
    GeneIDi 8517551.
    KEGGi gym:GYMC10_3367.
    PATRICi 32155249. VBIGeoSp56627_3336.

    Phylogenomic databases

    HOGENOMi HOG000049713.
    OMAi IDANNAY.
    OrthoDBi EOG6HMXC7.

    Enzyme and pathway databases

    BioCyci PSP481743:GH8K-3414-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei D3EID5.

    Family and domain databases

    Gene3Di 3.20.20.120. 1 hit.
    InterProi IPR029065. Enolase_C-like.
    IPR029017. Enolase_N_like.
    IPR013342. Mandelate_racemase_C.
    IPR001354. MR_MLE.
    [Graphical view ]
    PANTHERi PTHR13794. PTHR13794. 1 hit.
    Pfami PF01188. MR_MLE. 1 hit.
    [Graphical view ]
    SMARTi SM00922. MR_MLE. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51604. SSF51604. 1 hit.
    SSF54826. SSF54826. 1 hit.
    ProtoNeti Search...

    Publicationsi

    « Hide 'large scale' publications
    1. "Complete sequence of Geobacillus sp. Y412MC10."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Brumm P., Mead D.
      Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Y412MC10.
    2. "CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing protein from Geobacillus sp. Y412MC10."
      Malashkevich V.N., Toro R., Sauder J.M., Burley S.K., Almo S.C.
      Submitted (MAY-2010) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.88 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
    3. "Crystal structure ofmandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate."
      Malashkevich V.N., Patskovsky Y., Ramagopal U., Toro R., Sauder J.M., Burley S.K., Almo S.C.
      Submitted (SEP-2010) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
    4. "CRYSTAL STRUCTURE OF Galacturonate DEHYDRATASE FROM GEOBACILLUS SP. COMPLEXED WITH D-TARTRATE."
      Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Burley S.K., Almo S.C.
      Submitted (OCT-2010) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
    5. "Crystal structure of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with D-Galacturonate and 5-keto-4-deoxy-D-Galacturonate."
      Fedorov A.A., Fedorov E.V., Mills-Groninger F., Gerlt J.A., Almo S.C.
      Submitted (FEB-2011) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.
    6. "Crystal structure of the mutant E234A of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg."
      Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C.
      Submitted (DEC-2011) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.53 ANGSTROMS) OF 2-382.
    7. "CRYSTAL STRUCTURE OF D-Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg."
      Fedorov A.A., Fedorov E.V., Groninger-Poe F., Gerlt J.A., Almo S.C.
      Submitted (JAN-2012) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.64 ANGSTROMS) OF 2-382 IN COMPLEX WITH MAGNESIUM.

    Entry informationi

    Entry nameiD3EID5_GEOS4
    AccessioniPrimary (citable) accession number: D3EID5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 23, 2010
    Last sequence update: March 23, 2010
    Last modified: September 3, 2014
    This is version 30 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome

    External Data

    Dasty 3

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