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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

GYMC10_5317

Organism
Geobacillus sp. (strain Y412MC10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciPSP481743:GH8K-5376-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:GYMC10_5317Imported
OrganismiGeobacillus sp. (strain Y412MC10)Imported
Taxonomic identifieri481743 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000002381 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.
OMAiPDEWRID.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

D3EG05-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARTVKGTLT IEGQEIQITN PDKPLWPEVG ITKAMYLQKL AAISPFLLRY
60 70 80 90 100
CRGRLLTTIR YPHGAQGESF YQKNAPEPLP PFVQTYVHEN INYVLLNGLP
110 120 130 140 150
ELLWLGNLAA LEFHPSLHLA GSHLPCEWMI DLDPTLPEEP RIMEATAIVG
160 170 180 190 200
DVLSSLGLSS VPKTSGATGV QIIVPIPEGV TFDELRTVGQ FVGQYVTEKF
210 220 230 240 250
PKLFTIERLK KNRGDKIYFD YLQHYSGRTL AAPYTPRARR LGTVSTPLTW
260 270 280 290 300
DEVRQDVSPT EFHLLNIEER LREKGDLLQT LPPQPIENVI RHLKPKGKAA

SKRKG
Length:305
Mass (Da):34,310
Last modified:March 23, 2010 - v1
Checksum:iAF835CCAC310D5EB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001793 Genomic DNA. Translation: ACX67526.1.
RefSeqiYP_003245333.1. NC_013406.1.

Genome annotation databases

EnsemblBacteriaiACX67526; ACX67526; GYMC10_5317.
KEGGigym:GYMC10_5317.
PATRICi32159173. VBIGeoSp56627_5286.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001793 Genomic DNA. Translation: ACX67526.1.
RefSeqiYP_003245333.1. NC_013406.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACX67526; ACX67526; GYMC10_5317.
KEGGigym:GYMC10_5317.
PATRICi32159173. VBIGeoSp56627_5286.

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.
OMAiPDEWRID.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciPSP481743:GH8K-5376-MONOMER.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Geobacillus sp. Y412MC10."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Brumm P., Mead D.
    Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y412MC10Imported.

Entry informationi

Entry nameiD3EG05_GEOS4
AccessioniPrimary (citable) accession number: D3EG05
Entry historyi
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: April 29, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.