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D3ECS8

- D3ECS8_GEOS4

UniProt

D3ECS8 - D3ECS8_GEOS4

Protein
Submitted name:

ATP dependent DNA ligase

Gene

GYMC10_0669

Organism
Geobacillus sp. (strain Y412MC10)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (23 Mar 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPSP481743:GH8K-693-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:GYMC10_0669Imported
    OrganismiGeobacillus sp. (strain Y412MC10)Imported
    Taxonomic identifieri481743 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
    ProteomesiUP000002381: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD3ECS8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000049932.
    KOiK01971.
    OMAiLYTRHNN.
    OrthoDBiEOG6F2971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3ECS8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFIDPMLLAT APVPFSDSRF IFEPKIDGHR LIFSQQNGVV RLYTRHNNDC    50
    THQYPEIANA LFPHDIVLDG EIACVDSATG NPDFETVMTR FQAKKTDKIA 100
    ALSVSKPVTF VIFDVLQNNG VDLRRLPLLK RKEILSSIPL PSNNFGIIPF 150
    IEGAGEALFT QIEEREMERI VGKRKESIYE TGRRSDNWRK IINWLYADVF 200
    IIGYRKEEFG WLAAVPTLDN AKMRPAGIIE LGANPTHKKA FYNVVKPLVT 250
    GEDRNFVYVE PRIRARVKMR NWTRSGMLRT PVFERFII 288
    Length:288
    Mass (Da):33,058
    Last modified:March 23, 2010 - v1
    Checksum:i8586887B9FFBA275
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001793 Genomic DNA. Translation: ACX62971.1.
    RefSeqiWP_012818858.1. NC_013406.1.
    YP_003240778.1. NC_013406.1.

    Genome annotation databases

    EnsemblBacteriaiACX62971; ACX62971; GYMC10_0669.
    GeneIDi8514830.
    KEGGigym:GYMC10_0669.
    PATRICi32149887. VBIGeoSp56627_0678.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001793 Genomic DNA. Translation: ACX62971.1 .
    RefSeqi WP_012818858.1. NC_013406.1.
    YP_003240778.1. NC_013406.1.

    3D structure databases

    ProteinModelPortali D3ECS8.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACX62971 ; ACX62971 ; GYMC10_0669 .
    GeneIDi 8514830.
    KEGGi gym:GYMC10_0669.
    PATRICi 32149887. VBIGeoSp56627_0678.

    Phylogenomic databases

    HOGENOMi HOG000049932.
    KOi K01971.
    OMAi LYTRHNN.
    OrthoDBi EOG6F2971.

    Enzyme and pathway databases

    BioCyci PSP481743:GH8K-693-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Geobacillus sp. Y412MC10."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Brumm P., Mead D.
      Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Y412MC10Imported.

    Entry informationi

    Entry nameiD3ECS8_GEOS4
    AccessioniPrimary (citable) accession number: D3ECS8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 23, 2010
    Last sequence update: March 23, 2010
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3