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D3ECS8 (D3ECS8_GEOS4) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase EMBL ACX62971.1
Gene names
Ordered Locus Names:GYMC10_0669 EMBL ACX62971.1
OrganismGeobacillus sp. (strain Y412MC10) [Complete proteome] [HAMAP] EMBL ACX62971.1
Taxonomic identifier481743 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Paenibacillaceae › Paenibacillus

Protein attributes

Sequence length288 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACX62971.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3ECS8 [UniParc].

Last modified March 23, 2010. Version 1.
Checksum: 8586887B9FFBA275

FASTA28833,058
        10         20         30         40         50         60 
MFIDPMLLAT APVPFSDSRF IFEPKIDGHR LIFSQQNGVV RLYTRHNNDC THQYPEIANA 

        70         80         90        100        110        120 
LFPHDIVLDG EIACVDSATG NPDFETVMTR FQAKKTDKIA ALSVSKPVTF VIFDVLQNNG 

       130        140        150        160        170        180 
VDLRRLPLLK RKEILSSIPL PSNNFGIIPF IEGAGEALFT QIEEREMERI VGKRKESIYE 

       190        200        210        220        230        240 
TGRRSDNWRK IINWLYADVF IIGYRKEEFG WLAAVPTLDN AKMRPAGIIE LGANPTHKKA 

       250        260        270        280 
FYNVVKPLVT GEDRNFVYVE PRIRARVKMR NWTRSGMLRT PVFERFII

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References

[1]"Complete sequence of Geobacillus sp. Y412MC10."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Brumm P., Mead D.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Y412MC10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001793 Genomic DNA. Translation: ACX62971.1.
RefSeqYP_003240778.1. NC_013406.1.

3D structure databases

ProteinModelPortalD3ECS8.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX62971; ACX62971; GYMC10_0669.
GeneID8514830.
KEGGgym:GYMC10_0669.
PATRIC32149887. VBIGeoSp56627_0678.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000049932.
KOK01971.
OMAKFDGIRL.

Enzyme and pathway databases

BioCycPSP481743:GH8K-693-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD3ECS8_GEOS4
AccessionPrimary (citable) accession number: D3ECS8
Entry history
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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