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Protein
Submitted name:

Collagen, type IX, alpha 2, isoform CRA_a

Gene

COL9A2

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Collagen, type IX, alpha 2, isoform CRA_aImported
Gene namesi
Name:COL9A2Imported
ORF Names:hCG_15675Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: UniProtKB-KW
Complete GO annotation...

Expressioni

Gene expression databases

BgeeiD3DPU8.
ExpressionAtlasiD3DPU8. baseline and differential.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

KOiK08131.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3DPU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIPGVKGQP GLPGPPGLPG PGFAGPPGPP GPVGLPGEIG IRGPKGDPGP
60 70 80 90 100
DGPSGPPGPP GKPGRPGTIQ GLEGSADFLC PTNCPPGMKG PPGLQGVKGH
110 120 130 140 150
AGKRGILGDP GHQGKPGPKG DVGASGEQGI PGPPGPQGIR GYPGMAGPKG
160 170 180 190 200
ETGPHGYKGM VGAIGATGPP GEEGPRGPPG RAGEKGDEGS PGIRGPQGIT
210 220 230 240 250
GPKGATGPPG INGKDGTPGT PGMKGSAGQA GQPGSPGHQG LAGVPGQPGT
260 270 280 290 300
KGGPGDQGEP GPQGLPGFSG PPGKEGEPGP RGEIGPQGIM GQKGDQGERG
310 320 330 340 350
PVGQPGPQGR QGPKGEQGPP GIPGPQGLPG VKGDKGSPGK TGPRGKVGDP
360 370 380 390 400
GVAGLPGEKG EKGESGEPGP KGQQGVRGEP GYPGPSGDAG APGVQGYPGP
410 420 430 440 450
PGPRGLAGNR GVPGQPGRQG VEGRDATDQH IVDVALKMLQ EQLAEVAVSA
460 470 480 490 500
KREALGAVGM MGPPGPPGPP GYPGKQGPHG HPGPRGVPGI VGAVGQIGNT
510 520 530 540 550
GPKGKRGEKG DPGEVGRGHP GMPGPPGIPG LPGRPGQAIN GKDGDRGSPG
560 570 580 590
APGEAGRPGL PGPVGLPGFC EPAACLGASA YASARLTEPG SIKGP
Length:595
Mass (Da):56,360
Last modified:March 23, 2010 - v1
Checksum:i82053A2D9439E498
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471059 Genomic DNA. Translation: EAX07224.1.
CH471059 Genomic DNA. Translation: EAX07226.1.
CH471059 Genomic DNA. Translation: EAX07228.1.
CH471059 Genomic DNA. Translation: EAX07230.1.
CH471059 Genomic DNA. Translation: EAX07232.1.
RefSeqiXP_005270537.1. XM_005270480.1.
UniGeneiHs.418012.

Genome annotation databases

GeneIDi1298.
KEGGihsa:1298.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471059 Genomic DNA. Translation: EAX07224.1.
CH471059 Genomic DNA. Translation: EAX07226.1.
CH471059 Genomic DNA. Translation: EAX07228.1.
CH471059 Genomic DNA. Translation: EAX07230.1.
CH471059 Genomic DNA. Translation: EAX07232.1.
RefSeqiXP_005270537.1. XM_005270480.1.
UniGeneiHs.418012.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1298.
KEGGihsa:1298.

Organism-specific databases

CTDi1298.

Phylogenomic databases

KOiK08131.

Miscellaneous databases

GenomeRNAii1298.
NextBioi35489850.

Gene expression databases

BgeeiD3DPU8.
ExpressionAtlasiD3DPU8. baseline and differential.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 10 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence of the human genome."
    Venter J.C., Adams M.D., Myers E.W., Li P.W., Mural R.J., Sutton G.G., Smith H.O., Yandell M., Evans C.A., Holt R.A., Gocayne J.D., Amanatides P., Ballew R.M., Huson D.H., Wortman J.R., Zhang Q., Kodira C.D., Zheng X.H.
    , Chen L., Skupski M., Subramanian G., Thomas P.D., Zhang J., Gabor Miklos G.L., Nelson C., Broder S., Clark A.G., Nadeau J., McKusick V.A., Zinder N., Levine A.J., Roberts R.J., Simon M., Slayman C., Hunkapiller M., Bolanos R., Delcher A., Dew I., Fasulo D., Flanigan M., Florea L., Halpern A., Hannenhalli S., Kravitz S., Levy S., Mobarry C., Reinert K., Remington K., Abu-Threideh J., Beasley E., Biddick K., Bonazzi V., Brandon R., Cargill M., Chandramouliswaran I., Charlab R., Chaturvedi K., Deng Z., Di Francesco V., Dunn P., Eilbeck K., Evangelista C., Gabrielian A.E., Gan W., Ge W., Gong F., Gu Z., Guan P., Heiman T.J., Higgins M.E., Ji R.R., Ke Z., Ketchum K.A., Lai Z., Lei Y., Li Z., Li J., Liang Y., Lin X., Lu F., Merkulov G.V., Milshina N., Moore H.M., Naik A.K., Narayan V.A., Neelam B., Nusskern D., Rusch D.B., Salzberg S., Shao W., Shue B., Sun J., Wang Z., Wang A., Wang X., Wang J., Wei M., Wides R., Xiao C., Yan C., Yao A., Ye J., Zhan M., Zhang W., Zhang H., Zhao Q., Zheng L., Zhong F., Zhong W., Zhu S., Zhao S., Gilbert D., Baumhueter S., Spier G., Carter C., Cravchik A., Woodage T., Ali F., An H., Awe A., Baldwin D., Baden H., Barnstead M., Barrow I., Beeson K., Busam D., Carver A., Center A., Cheng M.L., Curry L., Danaher S., Davenport L., Desilets R., Dietz S., Dodson K., Doup L., Ferriera S., Garg N., Gluecksmann A., Hart B., Haynes J., Haynes C., Heiner C., Hladun S., Hostin D., Houck J., Howland T., Ibegwam C., Johnson J., Kalush F., Kline L., Koduru S., Love A., Mann F., May D., McCawley S., McIntosh T., McMullen I., Moy M., Moy L., Murphy B., Nelson K., Pfannkoch C., Pratts E., Puri V., Qureshi H., Reardon M., Rodriguez R., Rogers Y.H., Romblad D., Ruhfel B., Scott R., Sitter C., Smallwood M., Stewart E., Strong R., Suh E., Thomas R., Tint N.N., Tse S., Vech C., Wang G., Wetter J., Williams S., Williams M., Windsor S., Winn-Deen E., Wolfe K., Zaveri J., Zaveri K., Abril J.F., Guigo R., Campbell M.J., Sjolander K.V., Karlak B., Kejariwal A., Mi H., Lazareva B., Hatton T., Narechania A., Diemer K., Muruganujan A., Guo N., Sato S., Bafna V., Istrail S., Lippert R., Schwartz R., Walenz B., Yooseph S., Allen D., Basu A., Baxendale J., Blick L., Caminha M., Carnes-Stine J., Caulk P., Chiang Y.H., Coyne M., Dahlke C., Mays A., Dombroski M., Donnelly M., Ely D., Esparham S., Fosler C., Gire H., Glanowski S., Glasser K., Glodek A., Gorokhov M., Graham K., Gropman B., Harris M., Heil J., Henderson S., Hoover J., Jennings D., Jordan C., Jordan J., Kasha J., Kagan L., Kraft C., Levitsky A., Lewis M., Liu X., Lopez J., Ma D., Majoros W., McDaniel J., Murphy S., Newman M., Nguyen T., Nguyen N., Nodell M., Pan S., Peck J., Peterson M., Rowe W., Sanders R., Scott J., Simpson M., Smith T., Sprague A., Stockwell T., Turner R., Venter E., Wang M., Wen M., Wu D., Wu M., Xia A., Zandieh A., Zhu X.
    Science 291:1304-1351(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiD3DPU8_HUMAN
AccessioniPrimary (citable) accession number: D3DPU8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: April 1, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.