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D3DJZ2 (D3DJZ2_HYDTT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names

Superoxide dismutase EMBL BAI70144.1
Gene names
Name:sodA EMBL BAI70144.1
Ordered Locus Names:HTH_1697 EMBL BAI70144.1, Hydth_1682 EMBL ADO46065.1
OrganismHydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) [Complete proteome] [HAMAP]
Taxonomic identifier608538 [NCBI]
Taxonomic lineageBacteriaAquificaeAquificalesAquificaceaeHydrogenobacter

Protein attributes

Sequence length211 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: InterPro

superoxide dismutase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D3DJZ2 [UniParc].

Last modified March 23, 2010. Version 1.
Checksum: 1E5B010ECE291B03

FASTA21124,538
        10         20         30         40         50         60 
MAVHKLQPKD HLKPSDLRGI SNEQIEPHFE AHYKGYVTKY NEIQEKLADL NFSDRSKANQ 

        70         80         90        100        110        120 
NYSEYRELKV EETFNYMGVI LHELYFGHLK PQGEPSEALK KKVEEDFGSW DACIQEIKAA 

       130        140        150        160        170        180 
GIAFRGWAIL GLDIFSGRLV VNGLDAHNVY NYTGLIPIIV LDTYEHAYYV DQKNKRPPYI 

       190        200        210 
DAFLQSLNWD VINERFEKAM KAYEVLKDFV K 

« Hide

References

[1]"Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6."
Arai H., Kanbe H., Ishii M., Igarashi Y.
J. Bacteriol. 192:2651-2652(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 6534 / IAM 12695 / TK-6 [Tokyo] and TK-6.
[2]"Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6)."
US DOE Joint Genome Institute (JGI-PGF)
Zeytun A., Sikorski J., Nolan M., Lapidus A., Lucas S., Han J., Tice H., Cheng J., Tapia R., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Ovchinnikova G., Pati A., Chen A. expand/collapse author list , Palaniappan K., Ngatchou O., Land M., Hauser L., Chang Y., Jeffries C., Han C., Detter J., Ubler S., Rohde M., Tindall B., Wirth R., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Klenk H., Kyrpides N.
Stand. Genomic Sci. 4:131-143(2011)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 6534 / IAM 12695 / TK-6 [JGI] and TK-6 EMBL ADO46065.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002221 Genomic DNA. Translation: ADO46065.1.
AP011112 Genomic DNA. Translation: BAI70144.1.
RefSeqYP_003433345.1. NC_013799.1.
YP_005512358.1. NC_017161.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO46065; ADO46065; Hydth_1682.
BAI70144; BAI70144; HTH_1697.
GeneID12101596.
8772994.
KEGGhte:Hydth_1682.
hth:HTH_1697.
PATRIC32212335. VBIHydThe36152_1702.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000013583.
KOK04564.
OMAFGSWDAC.

Family and domain databases

InterProIPR001189. Mn/Fe_SOD.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERPTHR11404. PTHR11404. 1 hit.
PfamPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFPIRSF000349. SODismutase. 1 hit.
SUPFAMSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD3DJZ2_HYDTT
AccessionPrimary (citable) accession number: D3DJZ2
Entry history
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: July 9, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)