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Protein
Submitted name:

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Superoxide dismutase [Cu-Zn]Imported
Gene namesi
Name:sodCImported
Ordered Locus Names:HTH_0932Imported
OrganismiHydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)Imported
Taxonomic identifieri608538 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeHydrogenobacter
ProteomesiUP000002574 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD3DHT9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000263448.
KOiK04565.
OMAiAPRFESS.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D3DHT9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGLSCLSSG MALCAVLFSF SIAQELKAHA DIVNQKGEKI GKAELIQTNS
60 70 80 90 100
GVLIKLEASN LPPNAELAFH IHELGKCDPP DFMSAKGHFN PFKKKHGLLN
110 120 130 140 150
PDGPHAGDMP NVFTDANGNL KVHVLNTFVT LERGKENSLL KDGGTALMIH
160 170
HHRDDYRTDP AGDAGARIAC GVIK
Length:174
Mass (Da):18,617
Last modified:March 23, 2010 - v1
Checksum:i59F44A66E8E32125
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011112 Genomic DNA. Translation: BAI69391.1.
RefSeqiWP_012963571.1. NC_017161.1.
YP_003432592.1. NC_013799.1.
YP_005511617.1. NC_017161.1.

Genome annotation databases

EnsemblBacteriaiADO45324; ADO45324; Hydth_0928.
BAI69391; BAI69391; HTH_0932.
KEGGihte:Hydth_0928.
hth:HTH_0932.
PATRICi32210771. VBIHydThe36152_0940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011112 Genomic DNA. Translation: BAI69391.1.
RefSeqiWP_012963571.1. NC_017161.1.
YP_003432592.1. NC_013799.1.
YP_005511617.1. NC_017161.1.

3D structure databases

ProteinModelPortaliD3DHT9.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADO45324; ADO45324; Hydth_0928.
BAI69391; BAI69391; HTH_0932.
KEGGihte:Hydth_0928.
hth:HTH_0932.
PATRICi32210771. VBIHydThe36152_0940.

Phylogenomic databases

HOGENOMiHOG000263448.
KOiK04565.
OMAiAPRFESS.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6."
    Arai H., Kanbe H., Ishii M., Igarashi Y.
    J. Bacteriol. 192:2651-2652(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 6534 / IAM 12695 / TK-6 [Tokyo]Imported.

Entry informationi

Entry nameiD3DHT9_HYDTT
AccessioniPrimary (citable) accession number: D3DHT9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 23, 2010
Last sequence update: March 23, 2010
Last modified: May 27, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.