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D3DHT9

- D3DHT9_HYDTT

UniProt

D3DHT9 - D3DHT9_HYDTT

Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (23 Mar 2010)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

    Cofactori

    Binds 1 copper ion per subunit.UniRule annotation
    Binds 1 zinc ion per subunit.UniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Ligandi

    CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodCImported
    Ordered Locus Names:HTH_0932Imported, Hydth_0928Imported
    OrganismiHydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)Imported
    Taxonomic identifieri608538 [NCBI]
    Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeHydrogenobacter
    ProteomesiUP000008982: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini24 – 174151 PotentialImportedPRO_5000650764Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliD3DHT9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    HOGENOMiHOG000263448.
    KOiK04565.
    OMAiHANSDDY.

    Family and domain databases

    Gene3Di2.60.40.200. 1 hit.
    InterProiIPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view]
    PfamiPF00080. Sod_Cu. 1 hit.
    [Graphical view]
    SUPFAMiSSF49329. SSF49329. 1 hit.
    PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D3DHT9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGGLSCLSSG MALCAVLFSF SIAQELKAHA DIVNQKGEKI GKAELIQTNS    50
    GVLIKLEASN LPPNAELAFH IHELGKCDPP DFMSAKGHFN PFKKKHGLLN 100
    PDGPHAGDMP NVFTDANGNL KVHVLNTFVT LERGKENSLL KDGGTALMIH 150
    HHRDDYRTDP AGDAGARIAC GVIK 174
    Length:174
    Mass (Da):18,617
    Last modified:March 23, 2010 - v1
    Checksum:i59F44A66E8E32125
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002221 Genomic DNA. Translation: ADO45324.1.
    AP011112 Genomic DNA. Translation: BAI69391.1.
    RefSeqiYP_003432592.1. NC_013799.1.
    YP_005511617.1. NC_017161.1.

    Genome annotation databases

    EnsemblBacteriaiADO45324; ADO45324; Hydth_0928.
    BAI69391; BAI69391; HTH_0932.
    GeneIDi12101075.
    8772556.
    KEGGihte:Hydth_0928.
    hth:HTH_0932.
    PATRICi32210771. VBIHydThe36152_0940.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002221 Genomic DNA. Translation: ADO45324.1 .
    AP011112 Genomic DNA. Translation: BAI69391.1 .
    RefSeqi YP_003432592.1. NC_013799.1.
    YP_005511617.1. NC_017161.1.

    3D structure databases

    ProteinModelPortali D3DHT9.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADO45324 ; ADO45324 ; Hydth_0928 .
    BAI69391 ; BAI69391 ; HTH_0932 .
    GeneIDi 12101075.
    8772556.
    KEGGi hte:Hydth_0928.
    hth:HTH_0932.
    PATRICi 32210771. VBIHydThe36152_0940.

    Phylogenomic databases

    HOGENOMi HOG000263448.
    KOi K04565.
    OMAi HANSDDY.

    Family and domain databases

    Gene3Di 2.60.40.200. 1 hit.
    InterProi IPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view ]
    Pfami PF00080. Sod_Cu. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49329. SSF49329. 1 hit.
    PROSITEi PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6."
      Arai H., Kanbe H., Ishii M., Igarashi Y.
      J. Bacteriol. 192:2651-2652(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TK-6.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 6534 / IAM 12695 / TK-6 [JGI]Imported and TK-6Imported.

    Entry informationi

    Entry nameiD3DHT9_HYDTT
    AccessioniPrimary (citable) accession number: D3DHT9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 23, 2010
    Last sequence update: March 23, 2010
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3